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Series GSE259134 Query DataSets for GSE259134
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR517OZM)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing HIF-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR517OZM/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 26, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8111164 TF ChIP-seq from whole organism (ENCLB915KCD)
GSM8111165 TF ChIP-seq from whole organism (ENCLB727CFO)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE259134_ENCFF010BFU_peaks_and_background_as_input_for_IDR_ce10.bed.gz 167.2 Kb (ftp)(http) BED
GSE259134_ENCFF076BAW_peaks_and_background_as_input_for_IDR_ce10.bigBed 353.9 Kb (ftp)(http) BIGBED
GSE259134_ENCFF090QVS_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF230HAG_optimal_IDR_thresholded_peaks_ce10.bigBed 59.1 Kb (ftp)(http) BIGBED
GSE259134_ENCFF256YKT_peaks_and_background_as_input_for_IDR_ce11.bed.gz 165.5 Kb (ftp)(http) BED
GSE259134_ENCFF284YNQ_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF439EWS_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF445WAR_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF484RKD_optimal_IDR_thresholded_peaks_ce11.bed.gz 12.2 Kb (ftp)(http) BED
GSE259134_ENCFF555FAQ_optimal_IDR_thresholded_peaks_ce11.bigBed 56.8 Kb (ftp)(http) BIGBED
GSE259134_ENCFF736LGH_optimal_IDR_thresholded_peaks_ce10.bed.gz 14.1 Kb (ftp)(http) BED
GSE259134_ENCFF800IJS_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF993INV_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE259134_ENCFF997PIG_peaks_and_background_as_input_for_IDR_ce11.bigBed 351.2 Kb (ftp)(http) BIGBED
GSE259134_RAW.tar 119.6 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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