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Series GSE282172 Query DataSets for GSE282172
Status Public on Nov 13, 2025
Title SLAMF7 Defines Subsets of Human Effector CD8 T Cells.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Long-term control of viral replication relies on the efficient differentiation of memory T cells into effector T cells during secondary immune responses. Recent findings have identified T cell precursors for both memory and exhausted T cells, suggesting the existence of progenitor-like effector T cells. These cells can persist without antigenic challenge but expand and acquire effector functions upon recall immune responses. In this study, we demonstrate that the combination of SLAMF7 with either CD27 or TCF-1 effectively identifies progenitor-like effector CD8 T cells, while SLAMF7 with GPR56 and TOX defines effector CD8 T cells. These markers allow for the clear segregation of these distinct cell subsets. SLAMF7+ CD8T cells are dynamically modulated during viral infections, including HIV, HCV, CMV, and SARS-CoV-2, as well as during aging. We further characterize the SLAMF7 signature at both phenotypic and transcriptional levels. Notably, during aging, the SLAMF7 pathway becomes dysregulated, resulting in persistent phosphorylation of STAT1. Additionally, SLAMF7 ligation in the presence of IL-15 induces TCF-1 expression, which promotes the homeostatic proliferation of progenitor-like effector CD8 T cells.
 
Overall design To investigate transcriptional signature of virus-specific T cells during aging. Human CMV- and EBV-specific CD8 T cells restricted by different HLA were isolated by flow cytometry.
 
Contributor(s) Kared H, Tan C, Narang V, Larbi A
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Submission date Nov 18, 2024
Last update date Nov 13, 2025
Contact name Nicholas Ang
E-mail(s) angdzn@a-star.edu.sg
Organization name Singapore Immunology Network (SIgN)
Street address 8a Biomedical Grove, Singapore 138648
City Singapore
ZIP/Postal code Singapore 138648
Country Singapore
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (52)
GSM8637437 RHP5785_CMV NLP
GSM8637438 RHP5786_CMV #13
GSM8637439 RHP5787_EBV EBNA3B
Relations
BioProject PRJNA1187529

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE282172_Cpm.csv.gz 8.8 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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