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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 13, 2025 |
| Title |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jan 12, 2025 |
| Last update date |
Nov 13, 2025 |
| Contact name |
Alexander Marson |
| E-mail(s) |
alexander.marson@ucsf.edu
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| Organization name |
UCSF Gladstone Institutes
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| Street address |
1650 Owens St.
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platforms (5)
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| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
| GPL34281 |
Illumina NovaSeq X (Homo sapiens) |
| GPL34328 |
Illumina NovaSeq X (Mus musculus) |
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| Samples (95)
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| GSM8728218 |
Tconv FOXP3 low bin, Donor 1, CRISRP KO TF screen |
| GSM8728219 |
Tconv FOXP3 high bin, Donor 1, CRISRP KO TF screen |
| GSM8728220 |
Tconv FOXP3 low bin, Donor 2, CRISRP KO TF screen |
| GSM8728221 |
Tconv FOXP3 high bin, Donor 2, CRISRP KO TF screen |
| GSM8728222 |
Tconv FOXP3 low bin, Donor 3, CRISRP KO TF screen |
| GSM8728223 |
Tconv FOXP3 high bin, Donor 3, CRISRP KO TF screen |
| GSM8728224 |
Treg FOXP3 low bin, Donor 1, CRISRP KO TF screen |
| GSM8728225 |
Treg FOXP3 high bin, Donor 1, CRISRP KO TF screen |
| GSM8728226 |
Treg FOXP3 low bin, Donor 2, CRISRP KO TF screen |
| GSM8728227 |
Treg FOXP3 high bin, Donor 2, CRISRP KO TF screen |
| GSM8728228 |
Tconv FOXP3 low bin, Donor 1, CRISRPi screen |
| GSM8728229 |
Tconv FOXP3 high bin, Donor 1, CRISRPi screen |
| GSM8728230 |
Tconv FOXP3 low bin, Donor 3, CRISRPi screen |
| GSM8728231 |
Tconv FOXP3 high bin, Donor 3, CRISRPi screen |
| GSM8728232 |
Treg FOXP3 low bin, Donor 1, CRISRPi screen |
| GSM8728233 |
Treg FOXP3 high bin, Donor 1, CRISRPi screen |
| GSM8728234 |
Treg FOXP3 low bin, Donor 2, CRISRPi screen |
| GSM8728235 |
Treg FOXP3 high bin, Donor 2, CRISRPi screen |
| GSM9161587 |
Human Tconv stim, Donor 1, CRISPRoff AAVS1, gRNA gJ-48 |
| GSM9161588 |
Human Tconv stim, Donor 1, CRISPRoff AAVS1, gRNA gJ-49 |
| GSM9161589 |
Human Tconv stim, Donor 1, CRISPRoff NS-, gRNA gJ-53 |
| GSM9161590 |
Human Tconv stim, Donor 2, CRISPRoff AAVS1, gRNA gJ-48 |
| GSM9161591 |
Human Tconv stim, Donor 2, CRISPRoff AAVS1, gRNA gJ-49 |
| GSM9161592 |
Human Tconv stim, Donor 2, CRISPRoff NS-, gRNA gJ-53 |
| GSM9161593 |
Human Tconv rest, Donor 1, GATA3-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161594 |
Human Tconv rest, Donor 1, YY1-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161595 |
Human Tconv rest, Donor 1, YY1-active-motif ChIP, DSG/formaldehyde fixation |
| GSM9161596 |
Human Tconv rest, Donor 1, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161597 |
Human Tconv rest, Donor 1, MBD2 ChIP, DSG/formaldehyde fixation |
| GSM9161598 |
Human Tconv rest, Donor 1, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161599 |
Human Tconv rest, Donor 1, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9161600 |
Human Tconv rest, Donor 1, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161601 |
Human Tconv stim, Donor 1, GATA3-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161602 |
Human Tconv stim, Donor 1, YY1-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161603 |
Human Tconv stim, Donor 1, YY1-active-motif ChIP, DSG/formaldehyde fixation |
| GSM9161604 |
Human Tconv stim, Donor 1, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161605 |
Human Tconv stim, Donor 1, MBD2 ChIP, DSG/formaldehyde fixation |
| GSM9161606 |
Human Tconv stim, Donor 1, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161607 |
Human Tconv stim, Donor 1, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9161608 |
Human Tconv stim, Donor 1, FOXP3 ChIP, DSG/formaldehyde fixation |
| GSM9161609 |
Human Tconv stim, Donor 1, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161610 |
Human Tconv rest, Donor 2, GATA3-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161611 |
Human Tconv rest, Donor 2, YY1-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161612 |
Human Tconv rest, Donor 2, YY1-active-motif ChIP, DSG/formaldehyde fixation |
| GSM9161613 |
Human Tconv rest, Donor 2, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161614 |
Human Tconv rest, Donor 2, MBD2 ChIP, DSG/formaldehyde fixation |
| GSM9161615 |
Human Tconv rest, Donor 2, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161616 |
Human Tconv rest, Donor 2, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9161617 |
Human Tconv rest, Donor 2, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161618 |
Human Tconv stim, Donor 2, GATA3-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161619 |
Human Tconv stim, Donor 2, YY1-abcam ChIP, DSG/formaldehyde fixation |
| GSM9161620 |
Human Tconv stim, Donor 2, YY1-active-motif ChIP, DSG/formaldehyde fixation |
| GSM9161621 |
Human Tconv stim, Donor 2, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161622 |
Human Tconv stim, Donor 2, MBD2 ChIP, DSG/formaldehyde fixation |
| GSM9161623 |
Human Tconv stim, Donor 2, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161624 |
Human Tconv stim, Donor 2, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9161625 |
Human Tconv stim, Donor 2, FOXP3 ChIP, DSG/formaldehyde fixation |
| GSM9161626 |
Human Tconv stim, Donor 2, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161627 |
Human Tconv rest, Donor 1, Input ChIP, DSG/formaldehyde fixation |
| GSM9161628 |
Human Tconv stim, Donor 1, Input ChIP, DSG/formaldehyde fixation |
| GSM9161629 |
Human Tconv rest, Donor 2, Input ChIP, DSG/formaldehyde fixation |
| GSM9161630 |
Human Tconv stim, Donor 2, Input ChIP, DSG/formaldehyde fixation |
| GSM9161631 |
Mouse Tconv rest, Rep 1, YY1 ChIP, DSG/formaldehyde fixation |
| GSM9161632 |
Mouse Tconv rest, Rep 2, YY1 ChIP, DSG/formaldehyde fixation |
| GSM9161633 |
Mouse Tconv stim, Rep 2, YY1 ChIP, DSG/formaldehyde fixation |
| GSM9161634 |
Mouse Tconv rest, Rep 1, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161635 |
Mouse Tconv rest, Rep 2, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161636 |
Mouse Tconv stim, Rep 2, CTCF ChIP, DSG/formaldehyde fixation |
| GSM9161637 |
Mouse Tconv rest, Rep 1, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161638 |
Mouse Tconv rest, Rep 2, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161639 |
Mouse Tconv stim, Rep 2, EGR2 ChIP, DSG/formaldehyde fixation |
| GSM9161640 |
Mouse Tconv rest, Rep 1, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161641 |
Mouse Tconv rest, Rep 2, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161642 |
Mouse Tconv stim, Rep 2, H3K27ac ChIP, DSG/formaldehyde fixation |
| GSM9161643 |
Mouse Tconv rest, Rep 1, Input ChIP, DSG/formaldehyde fixation |
| GSM9161644 |
Mouse Tconv rest, Rep 2, Input ChIP, DSG/formaldehyde fixation |
| GSM9161645 |
Mouse Tconv stim, Rep 2, Input ChIP, DSG/formaldehyde fixation |
| GSM9177351 |
Human Treg rest, Donor 3, FOXP3 ChIP, DSG/formaldehyde fixation |
| GSM9177352 |
Human Treg stim, Donor 3, FOXP3 ChIP, DSG/formaldehyde fixation |
| GSM9177353 |
Human Treg rest, Donor 3, Input ChIP, DSG/formaldehyde fixation |
| GSM9177354 |
Human Treg stim, Donor 3, Input ChIP, DSG/formaldehyde fixation |
| GSM9177355 |
Human Treg rest, Donor 3, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9177356 |
Human Treg stim, Donor 3, SATB1 ChIP, DSG/formaldehyde fixation |
| GSM9177357 |
Human Treg stim, Donor 3, SRF ChIP, DSG/formaldehyde fixation |
| GSM9177358 |
Human Treg rest, Donor 2, FOXP3 ChIP, Formaldehyde fixation |
| GSM9177359 |
Human Treg stim, Donor 2, FOXP3 ChIP, Formaldehyde fixation |
| GSM9177360 |
Human Treg rest, Donor 2, Input ChIP, Formaldehyde fixation |
| GSM9177361 |
Human Treg stim, Donor 2, Input ChIP, Formaldehyde fixation |
| GSM9177362 |
Human Treg rest, Donor 2, SATB1 ChIP, Formaldehyde fixation |
| GSM9177363 |
Human Treg stim, Donor 2, SATB1 ChIP, Formaldehyde fixation |
| GSM9177364 |
Human Treg stim, Donor 2, SRF ChIP, Formaldehyde fixation |
| GSM9177365 |
Human Treg rest, Donor 1, H3K27ac ChIP, Formaldehyde fixation |
| GSM9177366 |
Human Treg rest, Donor 1, Input ChIP, Formaldehyde fixation |
| GSM9177367 |
Human Treg stim, Donor 1, H3K27ac ChIP, Formaldehyde fixation |
| GSM9177368 |
Human Treg stim, Donor 1, Input ChIP, Formaldehyde fixation |
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| This SuperSeries is composed of the following SubSeries:
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| GSE286470 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [CRISPRKO] |
| GSE286471 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [CRISPRi] |
| GSE286472 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [human_Treg_ChIP-seq] |
| GSE305062 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [CRISPRoff_RNA-seq] |
| GSE305063 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [human_Tconv_ChIP-seq] |
| GSE305064 |
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [mouse_Tconv_ChIP-seq] |
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| Relations |
| BioProject |
PRJNA1209559 |
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