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Series GSE313107 Query DataSets for GSE313107
Status Public on Dec 13, 2025
Title AMPK agonism optimizes the in vivo activation and anti-leukemia efficacy of chimeric antigen receptor T cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary BACKGROUND: Chimeric antigen receptor (CAR) T cells have achieved remarkable clinical success. However, up to 50% of CAR T cell-treated leukemia patients relapse and long-term survivor data indicate that CART cell persistence is key to enforcing relapse-free survival. Unfortunately, ex vivo expansion protocols often drive metabolic and functional exhaustion, reducing in vivo efficacy. Preclinical models have demonstrated that redirecting metabolism can improve in vivo T cell function. Here, we hypothesized that exposure to an agonist targeting AMP-activated protein kinase (AMPK) would create CARTs capable of increased in vivo function and enhanced leukemia clearance. METHODS: CART cells were generated from healthy human donor T cells via lentiviral transduction, followed by exposure to either Compound 991 or DMSO for 96 hours, followed by a 48-hour washout. During and after agonist treatment, T cells were harvested for metabolic and functional assessments. To test in vivo efficacy, immunodeficient mice were injected with luciferase+ NALM6 leukemia cells, and one week later with 991- or DMSO-expanded CARTs. Leukemia burden and anti-leukemia efficacy was assessed via radiance imaging and overall survival. RESULTS: Compound 991 treatment activated AMPK without limiting cellular expansion, and increased both mitochondrial density and handling of reactive oxygen species (ROS). Mechanistically, 991 treatment mimicked nutrient starvation, with increased autophagic flux and generation of mitochondrially-protective metabolites in treated cells. Importantly, receipt of 991-exposed CARTs significantly improved in vivo leukemia clearance and prolonged recipient survival, likely as a result of elevated activation and increased CD4+ T cell yields at early times post-injection. DISCUSSION: Ex vivo expansion is necessary to generate sufficient cell numbers, but sustained activation and differentiation often negatively impact in vivo persistence and function. Here, we demonstrate that promoting AMPK activity during in vitro CART expansion metabolically reprograms cells without limiting T cell yield, increases early activation marker expression following in vivo transfer, and ultimately enhances anti-leukemia efficacy. Importantly, Compound 991 treatment achieves these results without further modifying the expansion media, changing the CART construct, or genetically altering the cells. Altogether, these data highlight AMPK agonism as a potent and readily translatable approach to improve the metabolic profile and in vivo efficacy of adoptively transferred T cells.
 
Overall design 3 random human donor T cells were expanded in either Compound 991 or DMSO only control. CD4+ and CD8+ T cells were separately isolated for analysis.
 
Contributor(s) Braverman EL, Byersdorfer C, Amanda P, Aaron Y
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Submission date Dec 10, 2025
Last update date Dec 13, 2025
Contact name Amanda Catherine Poholek
E-mail(s) poholeka@pitt.edu
Organization name University of Pittsburgh
Department Pediatrics
Street address 4401 Penn Ave., Rangos Research Center 8129
City Pittsburgh
State/province Pennsylvania
ZIP/Postal code 15224
Country USA
 
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (12)
GSM9361117 DA_991_CD4_S23
GSM9361118 DA_991_CD8_S24
GSM9361119 DA_DMSO_CD4_S21
Relations
BioProject PRJNA1378540

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Supplementary file Size Download File type/resource
GSE313107_CD4_991_TPMS.csv.gz 650.3 Kb (ftp)(http) CSV
GSE313107_CD4_DMSO_TPMS.csv.gz 645.1 Kb (ftp)(http) CSV
GSE313107_CD8_991_TPMS.csv.gz 649.9 Kb (ftp)(http) CSV
GSE313107_CD8_DMSO_TPMS.csv.gz 656.6 Kb (ftp)(http) CSV
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