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Status |
Public on Jul 29, 2016 |
Title |
Trisomy 21 consistently activates the interferon response |
Organisms |
Homo sapiens; Mus musculus |
Experiment type |
Other Expression profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
27472900, 27653685 |
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Submission date |
Apr 01, 2016 |
Last update date |
Dec 03, 2021 |
Contact name |
Ahwan Pandey |
E-mail(s) |
ahwan.pandey@ucdenver.edu
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Organization name |
University of Colorado Anschutz Medical Center
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Department |
Pharmacology
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Lab |
Espinosa Lab
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Street address |
12800 E. 19th Ave.
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City |
Aurora |
State/province |
CO |
ZIP/Postal code |
80045 |
Country |
USA |
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Platforms (3) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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Samples (115)
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GSM2104476 |
Disomic, Fibroblast, Female, 2 Day old, replicate 1 |
GSM2104477 |
Disomic, Fibroblast, Female, 2 Day old, replicate 2 |
GSM2104478 |
Disomic, Fibroblast, Female, 2 Day old, replicate 3 |
GSM2104479 |
Disomic, Fibroblast, Male, 1 Year old, replicate 1 |
GSM2104480 |
Disomic, Fibroblast, Male, 1 Year old, replicate 2 |
GSM2104481 |
Disomic, Fibroblast, Female, 2 Year old, replicate 1 |
GSM2104482 |
Disomic, Fibroblast, Female, 2 Year old, replicate 2 |
GSM2104483 |
Disomic, Fibroblast, Female, 2 Year old, replicate 3 |
GSM2104484 |
Disomic, Fibroblast, Female, 11 Year old, replicate 1 |
GSM2104485 |
Disomic, Fibroblast, Female, 11 Year old, replicate 2 |
GSM2104486 |
Disomic, Fibroblast, Female, 11 Year old, replicate 3 |
GSM2104487 |
Disomic, Fibroblast, Male, 19 Year old, replicate 1 |
GSM2104488 |
Disomic, Fibroblast, Male, 19 Year old, replicate 2 |
GSM2104489 |
Disomic, Fibroblast, Male, 19 Year old, replicate 3 |
GSM2104490 |
Disomic, Fibroblast, Male, 20 Year old, replicate 1 |
GSM2104491 |
Disomic, Fibroblast, Male, 20 Year old, replicate 2 |
GSM2104492 |
Disomic, Fibroblast, Male, 20 Year old, replicate 3 |
GSM2104493 |
Trisomic, Fibroblast, Female, 3 Day old, replicate 2 |
GSM2104494 |
Trisomic, Fibroblast, Female, 3 Day old, replicate 3 |
GSM2104495 |
Trisomic, Fibroblast, Male, 1 Year old, replicate 1 |
GSM2104496 |
Trisomic, Fibroblast, Male, 1 Year old, replicate 2 |
GSM2104497 |
Trisomic, Fibroblast, Male, 1 Year old, replicate 3 |
GSM2104498 |
Trisomic, Fibroblast, Male, 2 Year old, replicate 1 |
GSM2104499 |
Trisomic, Fibroblast, Male, 2 Year old, replicate 2 |
GSM2104500 |
Trisomic, Fibroblast, Male, 2 Year old, replicate 3 |
GSM2104501 |
Trisomic, Fibroblast, Female, 14 Year old, replicate 1 |
GSM2104502 |
Trisomic, Fibroblast, Female, 14 Year old, replicate 2 |
GSM2104503 |
Trisomic, Fibroblast, Female, 14 Year old, replicate 3 |
GSM2104504 |
Trisomic, Fibroblast, Female, 19 Year old, replicate 1 |
GSM2104505 |
Trisomic, Fibroblast, Female, 19 Year old, replicate 2 |
GSM2104506 |
Trisomic, Fibroblast, Female, 19 Year old, replicate 3 |
GSM2104507 |
Trisomic, Fibroblast, Male, 21 Year old, replicate 1 |
GSM2104508 |
Trisomic, Fibroblast, Male, 21 Year old, replicate 2 |
GSM2105034 |
Disomic, Fibroblast, Female, 2 Day old, replicate 1 |
GSM2105037 |
Disomic, Fibroblast, Female, 2 Day old, replicate 2 |
GSM2105039 |
Disomic, Fibroblast, Male, 1 Year old, replicate 1 |
GSM2105042 |
Disomic, Fibroblast, Male, 1 Year old, replicate 2 |
GSM2105044 |
Disomic, Fibroblast, Female, 2 Year old, replicate 1 |
GSM2105047 |
Disomic, Fibroblast, Female, 2 Year old, replicate 2 |
GSM2105049 |
Disomic, Fibroblast, Female, 11 Year old, replicate 1 |
GSM2105052 |
Disomic, Fibroblast, Female, 11 Year old, replicate 2 |
GSM2105054 |
Disomic, Fibroblast, Male, 19 Year old, replicate 1 |
GSM2105057 |
Disomic, Fibroblast, Male, 19 Year old, replicate 2 |
GSM2105059 |
Disomic, Fibroblast, Male, 20 Year old, replicate 1 |
GSM2105062 |
Disomic, Fibroblast, Male, 20 Year old, replicate 2 |
GSM2105065 |
Trisomic, Fibroblast, Female, 3 Day old, replicate 1 |
GSM2105067 |
Trisomic, Fibroblast, Female, 3 Day old, replicate 2 |
GSM2105070 |
Trisomic, Fibroblast, Male, 1 Year old, replicate 1 |
GSM2105072 |
Trisomic, Fibroblast, Male, 1 Year old, replicate 2 |
GSM2105075 |
Trisomic, Fibroblast, Male, 2 Year old, replicate 1 |
GSM2105077 |
Trisomic, Fibroblast, Male, 2 Year old, replicate 2 |
GSM2105080 |
Trisomic, Fibroblast, Female, 14 Year old, replicate 1 |
GSM2105082 |
Trisomic, Fibroblast, Female, 14 Year old, replicate 2 |
GSM2105085 |
Trisomic, Fibroblast, Female, 19 Year old, replicate 1 |
GSM2105087 |
Trisomic, Fibroblast, Female, 19 Year old, replicate 2 |
GSM2105090 |
Trisomic, Fibroblast, Male, 21 Year old, replicate 1 |
GSM2105092 |
Trisomic, Fibroblast, Male, 21 Year old, replicate 2 |
GSM2105095 |
Disomic, Lymphoblast, Female, 7 Year old, replicate 1 |
GSM2105097 |
Disomic, Lymphoblast, Female, 7 Year old, replicate 2 |
GSM2105099 |
Disomic, Lymphoblast, Female, 14 Year old, replicate 1 |
GSM2105102 |
Disomic, Lymphoblast, Female, 14 Year old, replicate 2 |
GSM2105105 |
Disomic, Lymphoblast, Female, 18 Year old, replicate 1 |
GSM2105107 |
Disomic, Lymphoblast, Female, 18 Year old, replicate 2 |
GSM2105110 |
Trisomic, Lymphoblast, Female, 9 Year old, replicate 1 |
GSM2105112 |
Trisomic, Lymphoblast, Female, 9 Year old, replicate 2 |
GSM2105115 |
Trisomic, Lymphoblast, Female, 13 Year old, replicate 1 |
GSM2105117 |
Trisomic, Lymphoblast, Female, 13 Year old, replicate 2 |
GSM2105120 |
Trisomic, Lymphoblast, Female, 20 Year old, replicate 1 |
GSM2105123 |
Trisomic, Lymphoblast, Female, 20 Year old, replicate 2 |
GSM2241509 |
Normal, replicate 1 [N1_rep1] |
GSM2241510 |
Normal, replicate 2 [N1_rep2] |
GSM2241511 |
Normal, replicate 1 [N2_rep1] |
GSM2241512 |
Normal, replicate 2 [N2_rep2] |
GSM2241513 |
Normal, replicate 1 [N3_rep1] |
GSM2241514 |
Normal, replicate 2 [N3_rep2] |
GSM2241515 |
DP16 replicate 1 [P1_rep1] |
GSM2241516 |
DP16 replicate 2 [P1_rep2] |
GSM2241517 |
DP16 replicate 1 [P2_rep1] |
GSM2241518 |
DP16 replicate 2 [P2_rep2] |
GSM2241519 |
DP16 replicate 1 [P3_rep1] |
GSM2241520 |
DP16 replicate 2 [P3_rep2] |
GSM2241547 |
Disomic, Monocyte, Female, 17 Year old [D21_F17YR_5112016] |
GSM2241548 |
Disomic, Monocyte, Female, 29 Year old [D21_F29YR_5112016] |
GSM2241549 |
Disomic, Monocyte, Male, 31 Year old [D21_M31YR_5112016] |
GSM2241550 |
Disomic, Monocyte, Male, 38 Year old [D21_M38YR_5112016] |
GSM2241551 |
Trisomic, Monocyte, Female, 32 Year old [T21_F32YR_5112016] |
GSM2241552 |
Trisomic, Monocyte, Female, 45 Year old [T21_F45YR_5112016] |
GSM2241553 |
Trisomic, Monocyte, Female, 13 Year old [T21_M13YRA_5112016] |
GSM2241554 |
Trisomic, Monocyte, Female, 13 Year old [T21_M13YRB_5112016] |
GSM2241555 |
Trisomic, Monocyte, Male, 1 Year old [T21_M1YR_5312016] |
GSM2241556 |
Trisomic, Monocyte, Male, 14 Year old [T21_M14YR_5312016] |
GSM2241557 |
Trisomic, Monocyte, Male, 12 Year old [T21_M12YR_5312016] |
GSM2241558 |
Trisomic, Monocyte, Male, 13 Year old [T21_M13YR_5312016] |
GSM2241559 |
Trisomic, Monocyte, Female, 4 Year old [T21_F4YR_5312016] |
GSM2241560 |
Trisomic, Monocyte, Female, 33 Year old [T21_M33YR_5312016] |
GSM2241561 |
Disomic, Monocyte, Male, 22 Year old [D21_F22YR_5312016] |
GSM2241562 |
Disomic, Monocyte, Male, 31 Year old [D21_F31YR_5312016] |
GSM2241563 |
Disomic, Monocyte, Male, 38 Year old [D21_M38YR_5312016] |
GSM2241564 |
Trisomic, T cells, Male, 32 Year old [T21_F32YR] |
GSM2241565 |
Trisomic, T cells, Female, 45 Year old [T21_F45YR] |
GSM2241566 |
Trisomic, T cells, Female, 13 Year old [T21_M13YRA] |
GSM2241567 |
Trisomic, T cells, Female, 13 Year old [T21_M13YRB] |
GSM2241568 |
Disomic, T cells, Female, 17 Year old [D21_F17YR] |
GSM2241569 |
Trisomic, T cells, Male, 4 Year old [T21_F4YR] |
GSM2241570 |
Disomic, T cells, Male, 31 Year old [D21_M31YR] |
GSM2241571 |
Disomic, T cells, Female, 38 Year old [D21_M38YRA] |
GSM2241572 |
Disomic, T cells, Female, 29 Year old [D21_F29YR] |
GSM2241573 |
Trisomic, T cells, Female, 1 Year old [T21_M1YR] |
GSM2241574 |
Trisomic, T cells, Female, 14 Year old [T21_M14YR] |
GSM2241575 |
Trisomic, T cells, Female, 12 Year old [T21_M12YR] |
GSM2241576 |
Trisomic, T cells, Female, 13 Year old [T21_M13YR] |
GSM2241577 |
Trisomic, T cells, Female, 33 Year old [T21_M33YR] |
GSM2241578 |
Disomic, T cells, Female, 31 Year old [D21_F31YR] |
GSM2241579 |
Disomic, T cells, Female, 22 Year old [D21_F22YR] |
GSM2241580 |
Disomic, T cells, Female, 38 Year old [D21_M38YRB] |
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This SuperSeries is composed of the following SubSeries:
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GSE79840 |
shRNA cassette sequencing from disomic and trisomic fibroblasts cultured in the presence of shRNA kinome library for 14 days |
GSE79842 |
RNAseq from disomic and trisomic fibroblasts and lymphoblastoids |
GSE84526 |
RNAseq from Dp16 and control mice |
GSE84531 |
RNAseq from disomic and trisomic T cells and monocytes |
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Relations |
BioProject |
PRJNA317169 |
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