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Status |
Public on Feb 14, 2018 |
Title |
Differential gene expression of human melanoma cells [ChIP-seq] |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We report the gene expression comparison of human A375 melanoma cells with GDF6 and BMP pathway modulation. These comparisons were used to determine the gene signature regulated by GDF6.
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Overall design |
Examination of gene expression in one cell type +/- GDF6 knockdown as well as +/- downstream pathway reactivation.
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Contributor(s) |
Venkatesan AM, Ceol CJ, Gujja S, Edwards YJ |
Citation(s) |
29202482 |
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Submission date |
Jun 14, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Dr Yvonne Edwards, PhD |
Organization name |
University of Massachusetts Medical School
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Department |
Program in Molecular Medicine
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Lab |
Bioinformatics Core
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Street address |
373 Plantation Street
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City |
Worcester |
State/province |
MA |
ZIP/Postal code |
01605 |
Country |
USA |
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Platforms (1) |
GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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Samples (6)
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This SubSeries is part of SuperSeries: |
GSE83400 |
GDF6-induced BMP signaling reawakens a neural crest identity in melanoma to prevent cell death and differentiation |
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Relations |
BioProject |
PRJNA325676 |
SRA |
SRP076568 |