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| Status |
Public on Jul 29, 2016 |
| Title |
RNAseq from disomic and trisomic T cells and monocytes |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA was sequenced from Disomic and Trisomic individuals for chromosome 21 to identify consistent changes in gene expression across individuals
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| Overall design |
Cells were cultured at subconfluency and RNA harvested for sequencing
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| Contributor(s) |
Sullivan KD, Pandey A, Smith K, Espinosa JM |
| Citation(s) |
27472900, 27653685 |
| |
| Submission date |
Jul 18, 2016 |
| Last update date |
Dec 03, 2021 |
| Contact name |
Matthew D Galbraith |
| Organization name |
University of Colorado Anschutz Medical Campus
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| Department |
Pharmacology & Linda Crnic Institute for Down Syndrome
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| Street address |
RC1-N, Mail Stop 8303, Rm. P18-6114 12800 E. 19th Ave.
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| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (34)
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| GSM2241547 |
Disomic, Monocyte, Female, 17 Year old [D21_F17YR_5112016] |
| GSM2241548 |
Disomic, Monocyte, Female, 29 Year old [D21_F29YR_5112016] |
| GSM2241549 |
Disomic, Monocyte, Male, 31 Year old [D21_M31YR_5112016] |
| GSM2241550 |
Disomic, Monocyte, Male, 38 Year old [D21_M38YR_5112016] |
| GSM2241551 |
Trisomic, Monocyte, Female, 32 Year old [T21_F32YR_5112016] |
| GSM2241552 |
Trisomic, Monocyte, Female, 45 Year old [T21_F45YR_5112016] |
| GSM2241553 |
Trisomic, Monocyte, Female, 13 Year old [T21_M13YRA_5112016] |
| GSM2241554 |
Trisomic, Monocyte, Female, 13 Year old [T21_M13YRB_5112016] |
| GSM2241555 |
Trisomic, Monocyte, Male, 1 Year old [T21_M1YR_5312016] |
| GSM2241556 |
Trisomic, Monocyte, Male, 14 Year old [T21_M14YR_5312016] |
| GSM2241557 |
Trisomic, Monocyte, Male, 12 Year old [T21_M12YR_5312016] |
| GSM2241558 |
Trisomic, Monocyte, Male, 13 Year old [T21_M13YR_5312016] |
| GSM2241559 |
Trisomic, Monocyte, Female, 4 Year old [T21_F4YR_5312016] |
| GSM2241560 |
Trisomic, Monocyte, Female, 33 Year old [T21_M33YR_5312016] |
| GSM2241561 |
Disomic, Monocyte, Male, 22 Year old [D21_F22YR_5312016] |
| GSM2241562 |
Disomic, Monocyte, Male, 31 Year old [D21_F31YR_5312016] |
| GSM2241563 |
Disomic, Monocyte, Male, 38 Year old [D21_M38YR_5312016] |
| GSM2241564 |
Trisomic, T cells, Male, 32 Year old [T21_F32YR] |
| GSM2241565 |
Trisomic, T cells, Female, 45 Year old [T21_F45YR] |
| GSM2241566 |
Trisomic, T cells, Female, 13 Year old [T21_M13YRA] |
| GSM2241567 |
Trisomic, T cells, Female, 13 Year old [T21_M13YRB] |
| GSM2241568 |
Disomic, T cells, Female, 17 Year old [D21_F17YR] |
| GSM2241569 |
Trisomic, T cells, Male, 4 Year old [T21_F4YR] |
| GSM2241570 |
Disomic, T cells, Male, 31 Year old [D21_M31YR] |
| GSM2241571 |
Disomic, T cells, Female, 38 Year old [D21_M38YRA] |
| GSM2241572 |
Disomic, T cells, Female, 29 Year old [D21_F29YR] |
| GSM2241573 |
Trisomic, T cells, Female, 1 Year old [T21_M1YR] |
| GSM2241574 |
Trisomic, T cells, Female, 14 Year old [T21_M14YR] |
| GSM2241575 |
Trisomic, T cells, Female, 12 Year old [T21_M12YR] |
| GSM2241576 |
Trisomic, T cells, Female, 13 Year old [T21_M13YR] |
| GSM2241577 |
Trisomic, T cells, Female, 33 Year old [T21_M33YR] |
| GSM2241578 |
Disomic, T cells, Female, 31 Year old [D21_F31YR] |
| GSM2241579 |
Disomic, T cells, Female, 22 Year old [D21_F22YR] |
| GSM2241580 |
Disomic, T cells, Female, 38 Year old [D21_M38YRB] |
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| This SubSeries is part of SuperSeries: |
| GSE79843 |
Trisomy 21 consistently activates the interferon response |
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| Relations |
| BioProject |
PRJNA329594 |
| SRA |
SRP078912 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE84531_HTSeq_in_mon_counts.txt.gz |
541.1 Kb |
(ftp)(http) |
TXT |
| GSE84531_HTSeq_in_tcells_counts.txt.gz |
553.9 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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