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Series GSE92867 Query DataSets for GSE92867
Status Public on Mar 21, 2017
Title Sequencing analysis of m6A-methylated RNAs responding to UV
Organism Homo sapiens
Experiment type Other
Summary m6A RNA immunoprecipitation experiments were conducted to identify RNAs that are directly m6A-methylated by the METTL3 methylatransferase specifically in response to UV.
 
Overall design WT and METTL3 KO U2OS cells were subjected (plus UV condition) or not (minus UV condition) to a 50 J dose of UVC irradiation. Following irradiation, cells were lyzed and total RNAs were extracted. Poly A+ RNAs were isolated and subjected to m6A RNA precipitation.
 
Contributor(s) Laurent B, Nachtergaele S, Lu Z
Citation(s) 28297716
Submission date Dec 23, 2016
Last update date May 15, 2019
Contact name zhike lu
E-mail(s) zhikelu@gmail.com
Organization name University of Chicago
Department department of chemistry
Street address 5801 South Ellis Avenue
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (24)
GSM2439021 KO.minus.UV.R1.input
GSM2439022 KO.minus.UV.R1.IP
GSM2439023 KO.minus.UV.R2.input
Relations
BioProject PRJNA358676
SRA SRP095597

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE92867_KO.minus.UV.longest.bed.gz 87.4 Kb (ftp)(http) BED
GSE92867_KO.plus.UV.longest.bed.gz 59.9 Kb (ftp)(http) BED
GSE92867_WT.minus.UV.longest.bed.gz 88.1 Kb (ftp)(http) BED
GSE92867_WT.plus.UV.longest.bed.gz 97.3 Kb (ftp)(http) BED
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Processed data are available on Series record
Raw data are available in SRA

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