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Series GSE97098 Query DataSets for GSE97098
Status Public on Jun 17, 2019
Title RNAseq data of 81 liver cancer cell lines
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary A large panel of 81 liver cancer cell models, designated as LIver cancer MOdel REpository (LIMORE) was constructed. These cell lines include 31 public cell lines and 50 new cell models establishend from Chinese liver cancer patients. Whole genome sequencing (WGS), exome sequencing (WES) and RNA sequencing (RNAseq) were performed to obtain the genetic information for these cell lines. These cell lines and associated data provide new models and also a rich resource for liver cancer.
 
Overall design RNAseq for 81 liver cancer cell models was performed to analyze the gene expression of these lines. SK-Hep1 was also sequenced, though not considered as HCC cell line.
 
Contributor(s) Qiu Z, Zhang Z, Li H, Hui L
Citation(s) 31378681
Submission date Mar 27, 2017
Last update date Sep 18, 2019
Contact name Lijian Hui
E-mail(s) huilab@sibcb.ac.cn
Organization name CEMCS, CAS
Department SIBCB
Lab Huilab
Street address yueyang road 320
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (3)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (73)
GSM2551542 CLC10
GSM2551543 CLC12
GSM2551544 CLC14
Relations
Reanalysis of GSM2070032
Reanalysis of GSM2070035
Reanalysis of GSM2070038
Reanalysis of GSM2070040
Reanalysis of GSM2070042
Reanalysis of GSM2070044
Reanalysis of GSM2070047
Reanalysis of GSM2070050
Reanalysis of GSM2070053
BioProject PRJNA380668
SRA SRP102549

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97098_HCC81.genes.fpkm_table.log2.txt.gz 4.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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