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Status |
Public on Jun 17, 2019 |
Title |
RNAseq data of 81 liver cancer cell lines |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
A large panel of 81 liver cancer cell models, designated as LIver cancer MOdel REpository (LIMORE) was constructed. These cell lines include 31 public cell lines and 50 new cell models establishend from Chinese liver cancer patients. Whole genome sequencing (WGS), exome sequencing (WES) and RNA sequencing (RNAseq) were performed to obtain the genetic information for these cell lines. These cell lines and associated data provide new models and also a rich resource for liver cancer.
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Overall design |
RNAseq for 81 liver cancer cell models was performed to analyze the gene expression of these lines. SK-Hep1 was also sequenced, though not considered as HCC cell line.
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Contributor(s) |
Qiu Z, Zhang Z, Li H, Hui L |
Citation(s) |
31378681 |
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Submission date |
Mar 27, 2017 |
Last update date |
Sep 18, 2019 |
Contact name |
Lijian Hui |
E-mail(s) |
huilab@sibcb.ac.cn
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Organization name |
CEMCS, CAS
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Department |
SIBCB
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Lab |
Huilab
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Street address |
yueyang road 320
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City |
Shanghai |
ZIP/Postal code |
200031 |
Country |
China |
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Platforms (3) |
GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
GPL20795 |
HiSeq X Ten (Homo sapiens) |
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Samples (73)
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Relations |
Reanalysis of |
GSM2070032 |
Reanalysis of |
GSM2070035 |
Reanalysis of |
GSM2070038 |
Reanalysis of |
GSM2070040 |
Reanalysis of |
GSM2070042 |
Reanalysis of |
GSM2070044 |
Reanalysis of |
GSM2070047 |
Reanalysis of |
GSM2070050 |
Reanalysis of |
GSM2070053 |
BioProject |
PRJNA380668 |
SRA |
SRP102549 |