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Series GSE97584 Query DataSets for GSE97584
Status Public on May 31, 2018
Title Next Generation Sequencing Facilitates Quantitative Analysis for Chromatin Immunoprecipitation of Wild Type and PVT1 Knockdown by CRISPRi in MDA-MB-231 human breast cancer cell line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary CRISPRi targeting PVT1 specifically increased H3K9me3 at PVT1
 
Overall design ChIP performed with biological replicates for CRISPRi-PVT1 with H3K9me3, H3K27ac, HA-dCas9-KRAB
 
Contributor(s) Cho SW, Chang HY
Citation(s) 29731168
Submission date Apr 10, 2017
Last update date May 15, 2019
Contact name Howard Y. Chang
E-mail(s) howchang@stanford.edu
Phone 650-725-7022
Organization name Stanford
Lab Chang Lab
Street address 269 Campus Drive, CCSR 2130
City Stanford
State/province CALIFORNIA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (24)
GSM2572569 HA-control sgRNA-rep1
GSM2572570 HA-control sgRNA-rep2
GSM2572571 HA-PVT1sgRNAR2-rep1
This SubSeries is part of SuperSeries:
GSE97669 Promoter of lncRNA gene *PVT1* is a tumor suppressor DNA element
Relations
BioProject PRJNA382388
SRA SRP103776

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97584_HA_ind_Mergedpeaks_counts.bed.gz 849 b (ftp)(http) BED
GSE97584_K27Ac_ind_Mergedpeaks_counts.bed.gz 1.8 Mb (ftp)(http) BED
GSE97584_K9me3_ind_Mergedpeaks_counts.bed.gz 9.8 Mb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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