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Series GSE99992 Query DataSets for GSE99992
Status Public on Jun 13, 2018
Title Whole blood RNA-seq of pediatric cases of natural Chikungunya infection
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The primary aim of this study was to characterize the transcriptomic changes between the acute and convalescent phase of natural Chikungunya infections in pediatric patients as observed in peripheral blood samples.
 
Overall design 43 pediatric cases of natural Chikungunya infection were sampled for whole blood at two timepoints (1-2 and 15-17d post symptom onset). Two technical replicates were sequenced per blood sample.
 
Contributor(s) Pak TR, Michlmayr DH, Rahman AH, Amir ED, Kim E, Kim-Schulze S, Suprun M, Suarez-Fariñas M, Wolinsky S, Kasarskis A, Harris E
Citation(s) 30150281
NIH grant(s)
Grant ID Grant title Affiliation Name
F30 AI122673 Multiscale analysis of immune profiling data from dengue and chikungunya virus infections in humans MOUNT SINAI SCHOOL OF MEDICINE Theodore Robertson Pak
U19 AI118610 Dengue Human Immunology Project Consortium (DHIPC) MOUNT SINAI SCHOOL OF MEDICINE Ana Fernandez-Sesma
R33 AI100186 Metabolomics-based discovery of small molecule biomarkers for noninvasive dengue COLORADO STATE UNIVERSITY Rushika Perera
Submission date Jun 13, 2017
Last update date May 15, 2019
Contact name Andrew Kasarskis
E-mail(s) andrew.kasarskis@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Department Genetics and Genomic Sciences
Street address 1425 Madison Ave
City New York
State/province New York
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (172)
GSM2667266 Patient 1, acute sample, technical replicate 1
GSM2667267 Patient 1, acute sample, technical replicate 2
GSM2667268 Patient 1, conv sample, technical replicate 1
Relations
BioProject PRJNA390289
SRA SRP109111

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99992_BigTab.Timepoint.AllGenes.2017-04-25_Transcripts.csv.gz 1.3 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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