|
| Status |
Public on Jan 13, 2016 |
| Title |
1C1 |
| Sample type |
genomic |
| |
|
| Source name |
Patient 1_GCSC_rep 1
|
| Organism |
Homo sapiens |
| Characteristics |
patient: Patient 1
cell type: GCSC
|
| Treatment protocol |
Two independent pedigrees were isolated and collected, and patient-matched blood are used as control
|
| Growth protocol |
Human gastric cardia and Barrett's esopahus stem cells from endoscopic biopsy were cultured on 3T3 feeder layer.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA from cells were extracted using DNeasy blood and tissue kit (Qiagen)
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Followed Illumina standard protocol
|
| |
|
| Hybridization protocol |
Followed Illumina standard protocol
|
| Scan protocol |
Followed Illumina standard protocol
|
| Description |
Genomic DNA extracted from stem cells or blood samples were genotyped using HumanOmniZhongHua-8 v1.0 Beadchip Kit (Illumina).
|
| Data processing |
GenomeStudio Software (Illumina)
|
| |
|
| Submission date |
May 07, 2015 |
| Last update date |
Jan 13, 2016 |
| Contact name |
Frank McKeon |
| E-mail(s) |
mckeon.xian@gmail.com
|
| Phone |
8608372486
|
| Organization name |
University of Houston
|
| Department |
Biology and Biochemistry
|
| Street address |
3455 Cullen Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77004 |
| Country |
USA |
| |
|
| Platform ID |
GPL20166 |
| Series (2) |
| GSE68662 |
Copy number variation analysis of human Barrett's esophagus stem cells (HumanOmniZhongHua-8 v1.0 Beadchip) |
| GSE68664 |
Copy number variation analysis of human Barrett's esophagus stem cells |
|
