|
| Status |
Public on Mar 24, 2017 |
| Title |
WT_for_dbl-1_0uM_heme_rep2 |
| Sample type |
SRA |
| |
|
| Source name |
whole animal
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
strain: NU3xN2
developmental stage: L4
genotype: wild-type for dbl-1(nk3)
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA extraction protocol not provided.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Illumina Casava1.8.2 software used for basecalling.
Sequence reads were aligned using Tophat 2, version 2.1.0.
Cufflinks2, version 2.2.1, was used to calculate FPKM values.
Genome_build: ce10
Supplementary_files_format_and_content: Format: gzipped text file format, Content: FPKM value per gene
|
| |
|
| Submission date |
Dec 31, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Krause |
| Organization name |
NIH/NIDDK
|
| Lab |
Laboratory of Molecular Biology
|
| Street address |
Bld. 5, Rm B104, 5 Memorial Dr.
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20814 |
| Country |
USA |
| |
|
| Platform ID |
GPL18245 |
| Series (1) |
| GSE76455 |
Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis |
|
| Relations |
| BioSample |
SAMN04378668 |
| SRA |
SRX1510495 |
