|
| Status |
Public on Mar 24, 2016 |
| Title |
F1 2nd trigger rep 1 |
| Sample type |
SRA |
| |
|
| Source name |
F1 2nd trigger_Whole animal
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
strain: WT
developmental stage: Day 1 adult
sample group: F1 - repetitive RNAi exposure
tissue: Whole animal
|
| Treatment protocol |
RNAi by feeding/regular growth on emtpy vector bacteria
|
| Growth protocol |
20C
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRIZOL
NEBNext® Multiplex Small RNA Library Prep Set for Illumina®
|
| |
|
| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Sample 10
|
| Data processing |
Adapter trimming - cutadapt
Quality examination - fastQC
Alignment - butter
Counting - htseq count
Comparisons - DESeq2
Genome_build: ce10
Supplementary_files_format_and_content: sum of counts
|
| |
|
| Submission date |
Feb 08, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Leah Houri-Ze'evi |
| E-mail(s) |
lehouri@gmail.com
|
| Organization name |
Tel-Aviv University
|
| Department |
Neurobiology
|
| Lab |
Oded Rechavi
|
| Street address |
Haim Levanon
|
| City |
Tel-Aviv |
| ZIP/Postal code |
6934501 |
| Country |
Israel |
| |
|
| Platform ID |
GPL18245 |
| Series (1) |
| GSE77654 |
A Tunable Mechanism Determines the Transgenerational Duration of Small RNA Inheritance in C.elegans |
|
| Relations |
| BioSample |
SAMN04479249 |
| SRA |
SRX1564703 |
