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Sample GSM2422923 Query DataSets for GSM2422923
Status Public on Jan 03, 2017
Title eCLIP from HepG2 (ENCLB100IZV)
Sample type SRA
 
Source name Homo sapiens HepG2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: EIF3D
line: HepG2
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS492SDY (SAMN06122027)
dev stage: child
age: 15 year
Sex: male
passage number: 4
lab: Gene Yeo, UCSD
health state: hepatocellular carcinoma
link: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/
link: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
link: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027
link: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR041NUV/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against EIF3D
experiment encode accession: ENCSR041NUV
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR755PSW
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB100IZV
size range: 175-300
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE91432 eCLIP from HepG2 (ENCSR041NUV)
Relations
BioSample SAMN06122027
SRA SRX2424784
Named Annotation GSM2422923_ENCFF351MQG_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2422923_ENCFF300MMN_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2422923_ENCFF286YIR_peaks_GRCh38.bed.gz

Supplementary file Size Download File type/resource
GSM2422923_ENCFF010OYC_minus_strand_signal_of_unique_reads_hg19.bigWig 34.5 Mb (ftp)(http) BIGWIG
GSM2422923_ENCFF099DYI_peaks_hg19.bigBed 6.4 Mb (ftp)(http) BIGBED
GSM2422923_ENCFF286YIR_peaks_GRCh38.bed.gz 3.3 Mb (ftp)(http) BED
GSM2422923_ENCFF300MMN_minus_strand_signal_of_unique_reads_GRCh38.bigWig 33.3 Mb (ftp)(http) BIGWIG
GSM2422923_ENCFF351MQG_plus_strand_signal_of_unique_reads_GRCh38.bigWig 34.5 Mb (ftp)(http) BIGWIG
GSM2422923_ENCFF462ECY_plus_strand_signal_of_unique_reads_hg19.bigWig 35.8 Mb (ftp)(http) BIGWIG
GSM2422923_ENCFF650RVF_peaks_hg19.bed.gz 3.4 Mb (ftp)(http) BED
GSM2422923_ENCFF733BQQ_peaks_GRCh38.bigBed 6.3 Mb (ftp)(http) BIGBED
GSM2422923_ENCLB100IZV_README.txt.gz 881 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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