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Sample GSM2423295 Query DataSets for GSM2423295
Status Public on Jan 04, 2017
Title eCLIP from HepG2 (ENCLB977IOD)
Sample type SRA
 
Source name Homo sapiens HepG2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: RPS5
line: HepG2
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS621TAB (SAMN06122190)
dev stage: child
age: 15 year
Sex: male
passage number: 3
lab: Gene Yeo, UCSD
health state: hepatocellular carcinoma
link: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/
link: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
link: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027
link: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR307WAE/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against RPS5
experiment encode accession: ENCSR307WAE
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828MEJ
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB977IOD
size range: 175-300
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE91652 eCLIP from HepG2 (ENCSR307WAE)
Relations
BioSample SAMN06122190
SRA SRX2423767
Named Annotation GSM2423295_ENCFF753HDO_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2423295_ENCFF847KQO_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2423295_ENCFF787MCU_peaks_GRCh38.bed.gz

Supplementary file Size Download File type/resource
GSM2423295_ENCFF099XSV_plus_strand_signal_of_unique_reads_hg19.bigWig 5.3 Mb (ftp)(http) BIGWIG
GSM2423295_ENCFF136WQS_peaks_GRCh38.bigBed 1.4 Mb (ftp)(http) BIGBED
GSM2423295_ENCFF226GEB_peaks_hg19.bed.gz 837.6 Kb (ftp)(http) BED
GSM2423295_ENCFF323ELX_minus_strand_signal_of_unique_reads_hg19.bigWig 5.1 Mb (ftp)(http) BIGWIG
GSM2423295_ENCFF616JDD_peaks_hg19.bigBed 1.5 Mb (ftp)(http) BIGBED
GSM2423295_ENCFF753HDO_minus_strand_signal_of_unique_reads_GRCh38.bigWig 5.0 Mb (ftp)(http) BIGWIG
GSM2423295_ENCFF787MCU_peaks_GRCh38.bed.gz 811.8 Kb (ftp)(http) BED
GSM2423295_ENCFF847KQO_plus_strand_signal_of_unique_reads_GRCh38.bigWig 5.1 Mb (ftp)(http) BIGWIG
GSM2423295_ENCLB977IOD_README.txt.gz 878 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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