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Sample GSM2423296 Query DataSets for GSM2423296
Status Public on Jan 04, 2017
Title eCLIP from HepG2 (ENCLB595NXK)
Sample type SRA
 
Source name Homo sapiens HepG2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: RPS5
line: HepG2
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS074YUC (SAMN06121534)
dev stage: child
Sex: male
age: 15 year
health state: hepatocellular carcinoma
passage number: 4
lab: Gene Yeo, UCSD
link: ENCBS074YUC at ENCODE; https://www.encodeproject.org/ENCBS074YUC/
link: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
link: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027
link: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR307WAE/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against RPS5
experiment encode accession: ENCSR307WAE
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828MEJ
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB595NXK
size range: 175-300
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Dec 11, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE91652 eCLIP from HepG2 (ENCSR307WAE)
Relations
BioSample SAMN06121534
SRA SRX2423768
Named Annotation GSM2423296_ENCFF722WNW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2423296_ENCFF380LLT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2423296_ENCFF394MJK_peaks_GRCh38.bed.gz

Supplementary file Size Download File type/resource
GSM2423296_ENCFF020HPW_peaks_hg19.bed.gz 1.2 Mb (ftp)(http) BED
GSM2423296_ENCFF109AVE_peaks_hg19.bigBed 2.0 Mb (ftp)(http) BIGBED
GSM2423296_ENCFF309VRI_peaks_GRCh38.bigBed 2.0 Mb (ftp)(http) BIGBED
GSM2423296_ENCFF380LLT_minus_strand_signal_of_unique_reads_GRCh38.bigWig 12.4 Mb (ftp)(http) BIGWIG
GSM2423296_ENCFF394MJK_peaks_GRCh38.bed.gz 1.2 Mb (ftp)(http) BED
GSM2423296_ENCFF422DZI_minus_strand_signal_of_unique_reads_hg19.bigWig 12.7 Mb (ftp)(http) BIGWIG
GSM2423296_ENCFF571SIJ_plus_strand_signal_of_unique_reads_hg19.bigWig 13.2 Mb (ftp)(http) BIGWIG
GSM2423296_ENCFF722WNW_plus_strand_signal_of_unique_reads_GRCh38.bigWig 12.7 Mb (ftp)(http) BIGWIG
GSM2423296_ENCLB595NXK_README.txt.gz 882 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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