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GEO accession:
Sample GSM2423349
Query DataSets for GSM2423349
Status
Public on Jan 04, 2017
Title
eCLIP from K562 (ENCLB448DOH)
Sample type
SRA
Source name
Homo sapiens K562 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: Control
line: K562
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS517UIR (SAMN06122057)
dev stage: adult
age: 53 year
Sex: female
passage number: 5
lab: Gene Yeo, UCSD
health state: chronic myelogenous leukemia (CML)
link: ENCBS517UIR at ENCODE;
https://www.encodeproject.org/ENCBS517UIR/
link: Derived from ENCODE donor ENCDO000AAD;
https://www.encodeproject.org/ENCDO000AAD/
link: ENCODE dbxrefs Cellosaurus CVCL_0004;
http://web.expasy.org/cellosaurus/CVCL_0004
link: ATCC sample source;
http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule
total RNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina HiSeq 4000
Description
https://www.encodeproject.org/experiments/ENCSR346IHS/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against PPIL4
experiment encode accession: ENCSR346IHS
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB448DOH
size range: 175-300
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 11, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL20301
Series (1)
GSE91684
eCLIP from K562 (ENCSR346IHS)
Relations
BioSample
SAMN06122057
SRA
SRX2423823
Named Annotation
GSM2423349_ENCFF674WSW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM2423349_ENCFF027EPH_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM2423349_ENCFF027EPH_minus_strand_signal_of_unique_reads_GRCh38.bigWig
12.3 Mb
(ftp)
(http)
BIGWIG
GSM2423349_ENCFF051QKU_plus_strand_signal_of_unique_reads_hg19.bigWig
12.5 Mb
(ftp)
(http)
BIGWIG
GSM2423349_ENCFF096VVP_minus_strand_signal_of_unique_reads_hg19.bigWig
12.1 Mb
(ftp)
(http)
BIGWIG
GSM2423349_ENCFF674WSW_plus_strand_signal_of_unique_reads_GRCh38.bigWig
12.8 Mb
(ftp)
(http)
BIGWIG
GSM2423349_ENCLB448DOH_README.txt.gz
605 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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