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GEO accession:
Sample GSM2423389
Query DataSets for GSM2423389
Status
Public on Jan 04, 2017
Title
eCLIP from HepG2 (ENCLB584FIB)
Sample type
SRA
Source name
Homo sapiens HepG2 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: Control
line: HepG2
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS621TAB (SAMN06122190)
dev stage: child
age: 15 year
Sex: male
passage number: 3
lab: Gene Yeo, UCSD
health state: hepatocellular carcinoma
link: ENCBS621TAB at ENCODE;
https://www.encodeproject.org/ENCBS621TAB/
link: Derived from ENCODE donor ENCDO000AAC;
https://www.encodeproject.org/ENCDO000AAC/
link: ENCODE dbxrefs Cellosaurus CVCL_0027;
http://web.expasy.org/cellosaurus/CVCL_0027
link: ATCC sample source;
http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule
total RNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina HiSeq 4000
Description
https://www.encodeproject.org/experiments/ENCSR376KLZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SUPV3L1
experiment encode accession: ENCSR376KLZ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB584FIB
size range: 175-300
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 11, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL20301
Series (1)
GSE91708
eCLIP from HepG2 (ENCSR376KLZ)
Relations
BioSample
SAMN06122190
SRA
SRX2423881
Named Annotation
GSM2423389_ENCFF295JKG_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM2423389_ENCFF504PBT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM2423389_ENCFF021OMD_plus_strand_signal_of_unique_reads_hg19.bigWig
27.5 Mb
(ftp)
(http)
BIGWIG
GSM2423389_ENCFF142AIM_minus_strand_signal_of_unique_reads_hg19.bigWig
27.4 Mb
(ftp)
(http)
BIGWIG
GSM2423389_ENCFF295JKG_plus_strand_signal_of_unique_reads_GRCh38.bigWig
28.2 Mb
(ftp)
(http)
BIGWIG
GSM2423389_ENCFF504PBT_minus_strand_signal_of_unique_reads_GRCh38.bigWig
27.8 Mb
(ftp)
(http)
BIGWIG
GSM2423389_ENCLB584FIB_README.txt.gz
604 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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