|
| Status |
Public on Jan 04, 2017 |
| Title |
ChIP-seq from HEK293 (ENCLB340CIG) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF438 fusion protein
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: eGFP-ZNF438
line: HEK293
biomaterial_type: immortalized cell line
description: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF438 under the control of a CMV promoter.
biosample encode accession: ENCBS393YFN (SAMN06121894)
age: unknown
dev stage: embryonic
Sex: female
health state: unknown
lab: Michael Snyder, Stanford
link: ENCBS393YFN at ENCODE; https://www.encodeproject.org/ENCBS393YFN/
link: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/
link: Transfection protocol; https://www.encodeproject.org/documents/90e0e15b-ca37-4653-8c14-9748db04ae3f/@@download/attachment/Thermo_Fisher_Flp-In_system.png
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/0994a79b-44ae-49ef-a44c-6b2ebf85a230/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse%20%28modified%20for%20HEK293%20GFP-ZNF%29.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR559SSU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF438 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR559SSU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB340CIG
size range: 450-650
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Dec 11, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE91873 |
ChIP-seq from HEK293 (ENCSR559SSU) |
|
| Relations |
| BioSample |
SAMN06121894 |
| SRA |
SRX2424132 |
| Named Annotation |
GSM2423672_ENCFF327CDK_peaks_GRCh38.bed.gz |
| Named Annotation |
GSM2423672_ENCFF025CSB_fold_change_over_control_GRCh38.bigWig |
| Named Annotation |
GSM2423672_ENCFF197LTR_signal_p-value_GRCh38.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2423672_ENCFF025CSB_fold_change_over_control_GRCh38.bigWig |
1.9 Gb |
(ftp)(http) |
BIGWIG |
| GSM2423672_ENCFF197LTR_signal_p-value_GRCh38.bigWig |
1.9 Gb |
(ftp)(http) |
BIGWIG |
| GSM2423672_ENCFF263QRM_signal_p-value_hg19.bigWig |
1.8 Gb |
(ftp)(http) |
BIGWIG |
| GSM2423672_ENCFF327CDK_peaks_GRCh38.bed.gz |
6.9 Mb |
(ftp)(http) |
BED |
| GSM2423672_ENCFF572HUO_peaks_GRCh38.bigBed |
10.8 Mb |
(ftp)(http) |
BIGBED |
| GSM2423672_ENCFF785YEO_fold_change_over_control_hg19.bigWig |
1.9 Gb |
(ftp)(http) |
BIGWIG |
| GSM2423672_ENCFF855NIV_peaks_hg19.bed.gz |
7.0 Mb |
(ftp)(http) |
BED |
| GSM2423672_ENCFF890OYH_peaks_hg19.bigBed |
10.8 Mb |
(ftp)(http) |
BIGBED |
| GSM2423672_ENCLB340CIG_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
