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Sample GSM2423715

Query DataSets for GSM2423715

Status

Public on Jan 04, 2017

Title

ChIP-seq from MCF-7 (ENCLB352CPV)

Sample type

SRA

Source name

Homo sapiens MCF-7 immortalized cell line

Organism

Homo sapiens

Characteristics

antibody: NBN
line: MCF-7
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS195LAY (SAMN06121682)
dev stage: adult
Sex: female
age: 69 year
health state: breast cancer (adenocarcinoma)
lab: Michael Snyder, Stanford
link: ENCBS195LAY at ENCODE; https://www.encodeproject.org/ENCBS195LAY/
link: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/
link: growth protocol; https://www.encodeproject.org/documents/2a32df77-1325-4a2d-af71-2f2b68eb9830/@@download/attachment/Snyder_MCF7%20Cell%20Growth%20Protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 4000

Description

https://www.encodeproject.org/experiments/ENCSR591EBL/
***************
biological replicate number: 2
technical replicate number: 1
description: NBN ChIP-seq on human MCF-7
experiment encode accession: ENCSR591EBL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB352CPV
size range: 450-650

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Dec 11, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20301

Series (1)

GSE91899

ChIP-seq from MCF-7 (ENCSR591EBL)

Relations

BioSample

SAMN06121682

SRA

SRX2424191

Named Annotation

GSM2423715_ENCFF988VKK_peaks_GRCh38.bed.gz

Named Annotation

GSM2423715_ENCFF909UDS_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2423715_ENCFF128VGE_signal_p-value_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2423715_ENCFF073MRU_peaks_GRCh38.bigBed	10.8 Mb	(ftp)(http)	BIGBED
GSM2423715_ENCFF128VGE_signal_p-value_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2423715_ENCFF201VQL_signal_p-value_hg19.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSM2423715_ENCFF382PMB_fold_change_over_control_hg19.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSM2423715_ENCFF909UDS_fold_change_over_control_GRCh38.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSM2423715_ENCFF934HUV_peaks_hg19.bed.gz	6.5 Mb	(ftp)(http)	BED
GSM2423715_ENCFF950DFC_peaks_hg19.bigBed	10.8 Mb	(ftp)(http)	BIGBED
GSM2423715_ENCFF988VKK_peaks_GRCh38.bed.gz	6.4 Mb	(ftp)(http)	BED
GSM2423715_ENCLB352CPV_README.txt.gz	1.9 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file