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GEO accession:
Sample GSM2423866
Query DataSets for GSM2423866
Status
Public on Jan 04, 2017
Title
eCLIP from K562 (ENCLB582ELR)
Sample type
SRA
Source name
Homo sapiens K562 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: Control
line: K562
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS175JIH (SAMN06121657)
dev stage: adult
Sex: female
age: 53 year
health state: chronic myelogenous leukemia (CML)
passage number: 5
lab: Gene Yeo, UCSD
link: ENCBS175JIH at ENCODE;
https://www.encodeproject.org/ENCBS175JIH/
link: Derived from ENCODE donor ENCDO000AAD;
https://www.encodeproject.org/ENCDO000AAD/
link: ENCODE dbxrefs Cellosaurus CVCL_0004;
http://web.expasy.org/cellosaurus/CVCL_0004
link: ATCC sample source;
http://www.atcc.org/Products/All/HB-8065.aspx
Extracted molecule
total RNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina HiSeq 4000
Description
https://www.encodeproject.org/experiments/ENCSR696PRX/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against AARS
experiment encode accession: ENCSR696PRX
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB582ELR
size range: 175-300
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 11, 2016
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL20301
Series (1)
GSE91991
eCLIP from K562 (ENCSR696PRX)
Relations
BioSample
SAMN06121657
SRA
SRX2424322
Named Annotation
GSM2423866_ENCFF703VEL_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM2423866_ENCFF082RVJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM2423866_ENCFF082RVJ_plus_strand_signal_of_unique_reads_GRCh38.bigWig
36.8 Mb
(ftp)
(http)
BIGWIG
GSM2423866_ENCFF268ZWV_minus_strand_signal_of_unique_reads_hg19.bigWig
35.2 Mb
(ftp)
(http)
BIGWIG
GSM2423866_ENCFF430BUF_plus_strand_signal_of_unique_reads_hg19.bigWig
36.5 Mb
(ftp)
(http)
BIGWIG
GSM2423866_ENCFF703VEL_minus_strand_signal_of_unique_reads_GRCh38.bigWig
35.5 Mb
(ftp)
(http)
BIGWIG
GSM2423866_ENCLB582ELR_README.txt.gz
602 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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