PMC Links for GEO DataSets (Select 200030567) - PMC

Select item 43087171.

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie A. Davis, Pablo Prieto Barja, Alex Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei-Hoon See, Meagan Fastuca, Jorg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, Michael A. Beer, Cedric Notredame, Roderic Guigó, Thomas R. Gingeras

Nat Commun. 2015 Jan 13; 6: 5903. Published online 2015 Jan 13. doi: 10.1038/ncomms6903

PMCID:: PMC4308717

Abstract Article PDF–2.0M

Select item 35768532.

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

Xinxian Deng, Joseph B Hiatt, Di Kim Nguyen, Sevinc Ercan, David Sturgill, LaDeana W Hillier, Felix Schlesinger, Carrie A Davis, Valerie J Reinke, Thomas R Gingeras, Jay Shendure, Robert H Waterston, Brian Oliver, Jason D Lieb, Christine M Disteche

Nat Genet. Author manuscript; available in PMC 2013 Feb 20.

Published in final edited form as: Nat Genet. 2011 Oct 23; 43(12): 1179–1185. Published online 2011 Oct 23. doi: 10.1038/ng.948

PMCID:: PMC3576853

Abstract Article PDF–2.0M

Select item 34314933.

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James B. Brown, Leonard Lipovich, Jose M. Gonzalez, Mark Thomas, Carrie A. Davis, Ramin Shiekhattar, Thomas R. Gingeras, Tim J. Hubbard, Cedric Notredame, Jennifer Harrow, Roderic Guigó

Genome Res. 2012 Sep; 22(9): 1775–1789. doi: 10.1101/gr.132159.111

PMCID:: PMC3431493

Abstract Article PDF–3.0M

Select item 34314794.

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

Hagen Tilgner, David G. Knowles, Rory Johnson, Carrie A. Davis, Sudipto Chakrabortty, Sarah Djebali, João Curado, Michael Snyder, Thomas R. Gingeras, Roderic Guigó

Genome Res. 2012 Sep; 22(9): 1616–1625. doi: 10.1101/gr.134445.111

PMCID:: PMC3431479

Abstract Article PDF–1.1M

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