PMC Links for GEO DataSets (Select 200047792) - PMC

Select item 78871111.

Impact of Sequencing Depth and Library Preparation on Toxicological Interpretation of RNA-Seq Data in a “Three-Sample” Scenario

Dongying Li, Binsheng Gong, Joshua Xu, Baitang Ning, Weida Tong

Chem Res Toxicol. Author manuscript; available in PMC 2021 Feb 17.

Published in final edited form as: Chem Res Toxicol. 2021 Feb 15; 34(2): 529–540. Published online 2020 Dec 23. doi: 10.1021/acs.chemrestox.0c00368

PMCID:: PMC7887111

Abstract Article PDF–1.2M

Select item 43218992.

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium

SEQC Consortium

Nat Biotechnol. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Nat Biotechnol. 2014 Sep; 32(9): 903–914. Published online 2014 Aug 24. doi: 10.1038/nbt.2957

PMCID:: PMC4321899

Abstract Article PDF–1.7M

Select item 42908283.

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era

Zhenqiang Su, Hong Fang, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee J Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong

Genome Biol. 2014; 15(12): 3273. Published online 2014 Dec 3. doi: 10.1186/s13059-014-0523-y

PMCID:: PMC4290828

Abstract Article PDF–2.1M

Select item 42437064.

A comprehensive study design reveals treatment- and transcript abundance–dependent concordance between RNA-seq and microarray data

Charles Wang, Binsheng Gong, Pierre R. Bushel, Jean Thierry-Mieg, Danielle Thierry-Mieg, Joshua Xu, Hong Fang, Huixiao Hong, Jie Shen, Zhenqiang Su, Joe Meehan, Xiaojin Li, Lu Yang, Haiqing Li, Paweł P. Łabaj, David P. Kreil, Dalila Megherbi, Caiment Florian, Stan Gaj, Joost van Delft, Jos Kleinjans, Andreas Scherer, Devanarayan Viswanath, Jian Wang, Yong Yang, Hui-Rong Qian, Lee J. Lancashire, Marina Bessarabova, Yuri Nikolsky, Cesare Furlanello, Marco Chierici, Davide Albanese, Giuseppe Jurman, Samantha Riccadonna, Michele Filosi, Roberto Visintainer, Ke K. Zhang, Jianying Li, Jui-Hua Hsieh, Daniel L. Svoboda, James C. Fuscoe, Youping Deng, Leming Shi, Richard S. Paules, Scott S. Auerbach, Weida Tong

Nat Biotechnol. Author manuscript; available in PMC 2014 Nov 25.

Published in final edited form as: Nat Biotechnol. 2014 Sep; 32(9): 926–932. Published online 2014 Aug 24. doi: 10.1038/nbt.3001

PMCID:: PMC4243706

Abstract Article PDF–2.0M

Select item 41603745.

Detecting and correcting systematic variation in large-scale RNA sequencing data

Sheng Li, Pawel P. Labaj, Paul Zumbo, Peter Sykacek, Wei Shi, Leming Shi, John Phan, Leo Wu, May Wang, Charles Wang, Danielle Thierry-Mieg, Jean Thierry-Mieg, David P. Kreil, Christopher E. Mason

Nat Biotechnol. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Nat Biotechnol. 2014 Sep; 32(9): 888–895. Published online 2014 Aug 24. doi: 10.1038/nbt.3000

PMCID:: PMC4160374

Abstract Article PDF–2.3M

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