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SRX3425371: NHGRI_BladderCancerClinicalCohorts Illumina random exon sequencing of 'genomic DNA' paired-end library '0180681139_Illumina_P5-Pojif_P7-Xedeb' containing sample 'FCCC-020-B' from subject 'FCCC-020'
1 ILLUMINA (Illumina HiSeq 2000) run: 97.8M spots, 14.9G bases, 3.4Gb downloads

UUID: 2f21d83e-5111-484e-85a7-a7a08592087b
Design: Illumina sequencing of Homo sapiens via hybrid selection
Submitted by: Broad Institute (BI)
Study: Whole Exome Sequencing of Bladder Cancer Clinical Cohorts
show Abstracthide Abstract
Cisplatin-based chemotherapy is the standard of care for patients with muscle invasive urothelial carcinoma. Pathologic downstaging to pT0/pTis after neoadjuvant cisplatin-based chemotherapy is associated with improved survival, and some patients with metastatic disease achieve complete responses to these therapies. However, the molecular determinants of cisplatin response are incompletely understood. We performed whole exome sequencing on tumor and germline DNA from patients with muscle invasive or metastatic urothelial carcinoma who received cisplatin-based chemotherapy to identify somatic mutations that occurred preferentially in cisplatin responders.
Sample: Non-tumor DNA sample from a human male participant in the dbGaP study "Bladder Cancer Clinical Cohorts"
SAMN07831058 • SRS2716974 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: 0180681139_Illumina_P5-Pojif_P7-Xedeb
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 8 attributes...) (hide...)
analysis_type: Resequencing
library: 0180681139_Illumina_P5-Pojif_P7-Xedeb
library_type: HybridSelection
lsid: broadinstitute.org:bsp.prod.sample:9WYWJ
material_type: DNA:DNA Genomic
research_project: RP-989
target_set: whole_exome_illumina_coding_v1
work_request_or_pdo: PDO-6529
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000771
  • Consent Group: HMB-MDS

Runs: 1 run, 97.8M spots, 14.9G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR632563097,834,11014.9G3.4Gb2019-03-02

ID:
4769454

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