GPL7879[Accession] - GEO DataSets

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Select item 2000281151.

CBX3 Regulates Efficient RNA Processing Genome Wide

(Submitter supplied) HP1 alpha, beta, and gamma play an evolutionarily conserved role in the formation and maintenance of heterochromatin. In addition, some HP1 family members may also participate in transcriptional regulation of genes. Recently, HP1 gamma binding to the bodies of a subset of genes has been observed in human and murine cells. However, the generality of this phenomenon and the role HP1 gamma may play in this context are unknown. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

8 related Platforms
39 Samples

Download data: BED, BEDGRAPH, GFF, GPR, PAIR

Series

Accession:: GSE28115

ID:: 200028115

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 2000269942.

PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array

5 related Platforms
82 Samples

Download data: CEL, PAIR

Series

Accession:: GSE26994

ID:: 200026994

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000269883.

PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers (ChIP-chip data)

(Submitter supplied) Unraveling the complexity of transcriptional programs coded by different cell types has been one of the central goals of cell biology. Using genome-wide location analysis, we examined how two different cell types generate different responses to the NF-kappaB signaling pathway. We showed that, after tumor necrosis factor-alpha (TNF-alpha) treatment, NF-kappaB p65 subunit binds to distinct genome locations and subsequently induces different subsets of genes in human monocytic THP-1 cells versus HeLa cells . more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by genome tiling array

4 related Platforms
72 Samples

Download data: PAIR

Series

Accession:: GSE26988

ID:: 200026988

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000140834.

Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome

(Submitter supplied) The human body is composed of diverse cell types with distinct functions. While it is known that lineage specification depends on cell specific gene expression, which in turn is driven by promoters, enhancers, insulators and other cis-regulatory DNA sequences for each gene1-3, the relative roles of these regulatory elements in this process is not clear. We have previously developed a chromatin immunoprecipitation-based microarray method (ChIP-chip) to identify promoters, enhancers and insulator elements in the human genome4-6. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by genome tiling array; Expression profiling by array

97 related Platforms
235 Samples

Download data: CEL

Series

Accession:: GSE14083

ID:: 200014083

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000078795.

Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 02 of 4

(Submitter supplied) The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 02. Protocol: Whole human genome tiling arrays