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Status
Public on Mar 01, 2009
Title
Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 02 of 4
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Nimblegen Systems Inc.
Manufacture protocol
Whole human genome tiling arrays
Description
The 4 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 4 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 3 arrays. This is set 02.
Web link
http://www.nimblegen.com/ Contributor(s)
Heintzman ND , Hon GC , Hawkins D , Kheradpour P , Stark A , Stuart RK , Harp LF , Ye Z , Lee L , Ching KA , Ching CW , Antosiewicz JE , Liu H , Zhang X , Green RD , Stewart R , Thomson JA , Crawford GE , Kellis M , Ren B Submission date
Dec 20, 2008
Last update date
Oct 27, 2010
Contact name
Gary Chung Hon
Organization name
UT Southwestern
Department
OB/GYN
Street address
5323 Harry Hines Blvd.
City
Dallas
State/province
TX
ZIP/Postal code
75390
Country
USA
Samples (22)
GSM353323 , GSM664777 , GSM664778 , GSM664779 , GSM664780 , GSM664781
GSM664782 ,
GSM664783 ,
GSM664784 ,
GSM664785 ,
GSM664786 ,
GSM664787 ,
GSM664788 ,
GSM664789 ,
GSM664790 ,
GSM664791 ,
GSM664792 ,
GSM664793 ,
GSM664794 ,
GSM701857 ,
GSM701858 ,
GSM701859 Series (4)
GSE14083 Global Chromatin Modifications at Enhancers Correlate with Cell Type-Specific Gene Expression in the Human Genome
GSE26988 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers (ChIP-chip data)
GSE26994 PU.1 and C/EBPalpha synergistically program distinct response to NF-kappaB activation through establishing monocyte-specific enhancers
GSE28115 CBX3 Regulates Efficient RNA Processing Genome Wide
Data table header descriptions ID PROBE_DESIGN_ID
PROBE_ID SEQUENCE SEQUENCE UCSC hg18
CHROMOSOME RANGE_START RANGE_STRAND
Data table ID PROBE_ID SEQUENCE CHROMOSOME RANGE_START RANGE_STRAND 5955_1_1
CHR08FS024195294
GATTCTTGATGCTTTTATTTAGTTTTGATCATTTAACTGTAGTACATCATTTTTGCCC
chr8
024195294
+
5955_1_3
CHR08FS001346031
TAACTTACTGTCATGTCCCACAGTTTCATGGGGTCACTAGAGGAAGGCTT
chr8
001346031
+
5955_1_5
CHR07FS093028697
AGATTTTAAAATTTTCCAGATAAATAAATACAATTCCTTTTCCAGTGTGAGGCA
chr7
093028697
+
5955_1_7
CHR06FS162256940
GTGCAAATTGGAAGGATGATCATGGCTGCGAGGCTACAGTTATGACTAAA
chr6
162256940
+
5955_1_9
CHR07FS146121559
AATAACTGAGGAGGCTAAGTACTTAACATCAATTTGCAGGGCAGTCTCATTTTATCAGGA
chr7
146121559
+
5955_1_11
CHR08FS025666690
TATTTCAATCTCTAAAGTTCTCTCTTTCTCACATGCGTGCGCGCACACACA
chr8
025666690
+
5955_1_13
CHR08FS052331015
AAAACACAGCCAGTTGATTGAGCCCTCATCTCCCTTTACTGTGAAATGCAT
chr8
052331015
+
5955_1_15
CHR07FS148182074
ATTTACCTAAATCAGACATTCCTGTCCCTCTTTACCCAGCTGCCAATAACTGAATAA
chr7
148182074
+
5955_1_17
CHR08FS038529450
TAGAGAATTCAGTGGCTCGATACAAATGTATCTTGGCATCTTGTAGTCAGGAGGACAAATTT
chr8
038529450
+
5955_1_19
CHR07FS015956393
TGGAAAATCACAATTAGAATACCACAGTAAAAATTGCCACAGGCATGATCCAGAGATAGATGCTA
chr7
015956393
+
5955_1_21
CHR08FS003112299
ATTTGAAATACAAAGGTGCGTTGGAGCAAGGCTTCGCTGCAACAATAGATGAT
chr8
003112299
+
5955_1_23
CHR07FS087358273
AGAGTCTTGAATGGACATGTATAAATTTCAAAATGTTTATTAGGTTCCCATAAATG
chr7
087358273
+
5955_1_25
CHR08FS028459651
TGGTGATCATATTTGGCACATCAGTCTACACCTAGTTGTGTGCTGTAGCT
chr8
028459651
+
5955_1_27
CHR07FS154955863
TTAATTGCTGTTCCTATAGCTAAAAGCATAACAGGCTTTGATTACATGCTAAATAGAATGAA
chr7
154955863
+
5955_1_29
CHR07FS020438133
AAAGGTGAGGATGGAAAGCCCAAAGGCAGCAAAAATTCATGGTCTGTTAAATGTTGA
chr7
020438133
+
5955_1_31
CHR07FS031215430
GGCTAAGGATTTTTTTCTGCATCTGGAGTCACTGGGAAATCGTGGCAACTTTTTT
chr7
031215430
+
5955_1_33
CHR07FS040414827
TTCTCATTGTTGGAAATTTGGAGAGCTCAGGAAAATACCAAAATGACAGGGAAACACA
chr7
040414827
+
5955_1_35
CHR07FS076263263
AAAGGCAAACACCAGTATTTCTCCAGACTTCCTTAGTAAATATGATACTGGCATTCTGA
chr7
076263263
+
5955_1_37
CHR07FS001925869
ATGTCAGAGCTGAGAGAGCTGAACCCAAGGTCACATGGCTGCTGGTGCAG
chr7
001925869
+
5955_1_39
CHR08FS054464864
ATTTCTTAGTGTTTACTGGGAGACTGGGTGAAGCAAAGCTCGATTTTTGAGGCTTA
chr8
054464864
+
2197815 221649 Kbytes .Supplementary data files not provided
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