GSE203644[Accession] - GEO DataSets - NCBI

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Items: 19

Select item 2002036441.

Mesoscale chromatin confinement facilitates target search of pioneer transcription factors in live cells [ChIP-seq]

(Submitter supplied) To dissect the molecular mechanisms of the transcription factor FOXA2 accessing nucleosomal targets and controlling cell fates, we combined live-cell single-molecule imaging, genome editing, chromatin binding, chromatin accessibility, and RNA sequence analysis. Using the hESC differentiation cellular system to anterior primitive streak (APS) and definitive endoderm (DE), we demonstrated by RNA-seq that FOXA2 is a lineage-determining transcription factor for DE formation and that its intrinsically disordered C-terminal domain (CTD) is essential for its normal function. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL24676
17 Samples

Download data: BED, BW, NARROWPEAK

Series

Accession:: GSE203644

ID:: 200203644

Select item 1000246762.

Illumina NovaSeq 6000 (Homo sapiens)

Organism:: Homo sapiens

14627 Series
879003 Samples

Platform

Accession:: GPL24676

ID:: 100024676

Select item 3079963583.

U2OS_SOX2FLFOXA2CTD_day4_bio rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Sample

Accession:: GSM7996358

ID:: 307996358

SRA Run Selector

Select item 3079963574.

U2OS_SOX2FLFOXA2CTD_day4_bio rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996357

ID:: 307996357

SRA Run Selector

Select item 3079963565.

U2OS_SOX2FL_day4_bio rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Sample

Accession:: GSM7996356

ID:: 307996356

SRA Run Selector

Select item 3079963556.

U2OS_SOX2FL_day4_bio rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996355

ID:: 307996355

SRA Run Selector

Select item 3079963547.

U2OS_FOXA3dCTD_day4_biol rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996354

ID:: 307996354

SRA Run Selector

Select item 3079963538.

U2OS_FOXA3dCTD_day4_biol rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996353

ID:: 307996353

SRA Run Selector

Select item 3079963529.

U2OS_FOXA1dCTD_day4_biol rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996352

ID:: 307996352

SRA Run Selector

Select item 30799635110.

U2OS_FOXA1dCTD_day4_biol rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996351

ID:: 307996351

SRA Run Selector

Select item 30799635011.

U2OS_FOXA3FL_day4_biol rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996350

ID:: 307996350

SRA Run Selector

Select item 30799634912.

U2OS_FOXA3FL_day4_biol rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996349

ID:: 307996349

SRA Run Selector

Select item 30799634813.

U2OS_FOXA1FL_day4_bio rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996348

ID:: 307996348

SRA Run Selector

Select item 30799634714.

U2OS_FOXA1FL_day4_bio rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996347

ID:: 307996347

SRA Run Selector

Select item 30799634615.

U2OS_FOXA2dCTD_day4_biol rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996346

ID:: 307996346

SRA Run Selector

Select item 30799634516.

U2OS_FOXA2dCTD_day4_biol rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996345

ID:: 307996345

SRA Run Selector

Select item 30799634217.

U2OS_FOXA2FL_day4_biol rep2

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BW

Sample

Accession:: GSM7996342

ID:: 307996342

SRA Run Selector

Select item 30799634118.

U2OS_FOXA2FL_day4_biol rep1

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Download data: BED, BW

Sample

Accession:: GSM7996341

ID:: 307996341

SRA Run Selector

Select item 30799633819.

Organism:: Homo sapiens

Source name:: cell line

Platform:: GPL24676
Series:: GSE203644 GSE203650

Sample

Accession:: GSM7996338

ID:: 307996338

SRA Run Selector

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