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GEO accession:
Series GSE203650
Query DataSets for GSE203650
Status
Public on Apr 28, 2024
Title
Mesoscale chromatin confinement facilitates target search of pioneer transcription factors in live cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
May 23, 2022
Last update date
Apr 30, 2024
Contact name
Wulan Deng
E-mail(s)
denglabpku@outlook.com
Organization name
Peking University
Department
BIOPIC
Street address
Beijing Haidian District Yiheyuan Road #5
City
Beijing
ZIP/Postal code
100871
Country
China
Platforms (2)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (40)
Less...
More...
GSM6181133
WT_ES
GSM6181134
WT_APS
GSM6181135
WT_DE
GSM6181136
KO1_APS
GSM6181137
KO1_DE
GSM6181138
KO21_APS
GSM6181139
KO21_DE
GSM6181140
dC11_APS
GSM6181141
dC11_DE
GSM6181142
dCdN10_APS
GSM6181143
dCdN10_DE
GSM7996338
U2OS_Input
GSM7996341
U2OS_FOXA2FL_day4_biol rep1
GSM7996342
U2OS_FOXA2FL_day4_biol rep2
GSM7996345
U2OS_FOXA2dCTD_day4_biol rep1
GSM7996346
U2OS_FOXA2dCTD_day4_biol rep2
GSM7996347
U2OS_FOXA1FL_day4_bio rep1
GSM7996348
U2OS_FOXA1FL_day4_bio rep2
GSM7996349
U2OS_FOXA3FL_day4_biol rep1
GSM7996350
U2OS_FOXA3FL_day4_biol rep2
GSM7996351
U2OS_FOXA1dCTD_day4_biol rep1
GSM7996352
U2OS_FOXA1dCTD_day4_biol rep2
GSM7996353
U2OS_FOXA3dCTD_day4_biol rep1
GSM7996354
U2OS_FOXA3dCTD_day4_biol rep2
GSM7996355
U2OS_SOX2FL_day4_bio rep1
GSM7996356
U2OS_SOX2FL_day4_bio rep2
GSM7996357
U2OS_SOX2FLFOXA2CTD_day4_bio rep1
GSM7996358
U2OS_SOX2FLFOXA2CTD_day4_bio rep2
GSM7996359
ATAC_U2OS_WT_biol rep1
GSM7996360
ATAC_U2OS_WT_biol rep2
GSM7996363
ATAC_U2OS_FOXA2FL_day4_biol rep1
GSM7996364
ATAC_U2OS_FOXA2FL_day4_biol rep2
GSM7996367
ATAC_U2OS_FOXA2dCTD_day4_biol rep1
GSM7996368
ATAC_U2OS_FOXA2dCTD_day4_biol rep2
GSM7996369
ATAC_U2OS_SOX2FL_day4_biol rep1
GSM7996370
ATAC_U2OS_SOX2FL_day4_biol rep2
GSM7996371
ATAC_U2OS_SOX2FLFOXA2CTD_day4_biol rep1
GSM7996372
ATAC_U2OS_SOX2FLFOXA2CTD_day4_biol rep2
GSM7996373
ATAC_U2OS_WT_SOX2_CellLine_biol rep1
GSM7996374
ATAC_U2OS_WT_SOX2_CellLine_biol rep2
This SuperSeries is composed of the following SubSeries:
GSE203640
Mesoscale chromatin confinement facilitates target search of pioneer transcription factors in live cells [RNA-seq]
GSE203644
Mesoscale chromatin confinement facilitates target search of pioneer transcription factors in live cells [ChIP-seq]
GSE203649
Mesoscale chromatin confinement facilitates target search of pioneer transcription factors in live cells [ATAC-seq]
Relations
BioProject
PRJNA841678
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE203650_RAW.tar
4.6 Gb
(http)
(custom)
TAR (of BED, BW, TXT)
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