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Items: 7

1.

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts [PAR-CLIP]

(Submitter supplied) Protein-RNA interactions are fundamental to core biological processes, such as mRNA splicing, localization, degradation and translation. We developed a photoreactive nucleotide-enhanced UV crosslinking and oligo(dT) purification approach to identify the mRNA-bound proteome using quantitative proteomics and to display the protein occupancy on mRNA transcripts by next-generation sequencing. Application to a human embryonic kidney cell line identified close to 800 proteins. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL11154
5 Samples
Download data: BED
Series
Accession:
GSE38201
ID:
200038201

PubMed Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

PARCLIP_ZC3H7B

Organism:
Homo sapiens
Source name:
HEK293 cell culture
Platform:
GPL11154
Series:
GSE38157 GSE38201
Download data: BED
Sample
Accession:
GSM936510
ID:
300936510

SRA Run Selector

4.

PARCLIP_CAPRIN1

Organism:
Homo sapiens
Source name:
HEK293 cell culture
Platform:
GPL11154
Series:
GSE38157 GSE38201
Download data: BED
Sample
Accession:
GSM936509
ID:
300936509

SRA Run Selector

5.

PARCLIP_C22orf28

Organism:
Homo sapiens
Source name:
HEK293 cell culture
Platform:
GPL11154
Series:
GSE38157 GSE38201
Download data: BED
Sample
Accession:
GSM936508
ID:
300936508

SRA Run Selector

6.

PARCLIP_C17orf85

Organism:
Homo sapiens
Source name:
HEK293 cell culture
Platform:
GPL11154
Series:
GSE38157 GSE38201
Download data: BED
Sample
Accession:
GSM936507
ID:
300936507

SRA Run Selector

7.

PARCLIP_ALKBH5

Organism:
Homo sapiens
Source name:
HEK293 cell culture
Platform:
GPL11154
Series:
GSE38157 GSE38201
Download data: BED
Sample
Accession:
GSM936506
ID:
300936506

SRA Run Selector

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db=gds|term=GSE38201[Accession]|query=1|qty=2|blobid=MCID_6642cde35f31ac4911776303|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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