GSE40465[Accession] - GEO DataSets - NCBI

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Select item 2000404651.

Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain

(Submitter supplied) The complexity of the brain and the links entailed to its functional diversity remain a major challenge of biology to understand. Distinct anatomical areas regulate a vast array of processes including organismal homeostasis, cognitive functions and susceptibility to neurological pathologies, many of which define our species. Distal enhancers have emerged as key regulatory elements that acquire epigenetic modifications in a cell-type specific manner, thus enforcing cell- and species-specific gene expression programs. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL16288 GPL11154
151 Samples

Download data: BED, BEDGRAPH, BW, TXT

Series

Accession:: GSE40465

ID:: 200040465

PubMed Similar studies SRA Run Selector

Select item 1000162882.

AB 5500xl Genetic Analyzer (Homo sapiens)

Organism:: Homo sapiens

70 Series
1301 Samples

Platform

Accession:: GPL16288

ID:: 100016288

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3014231714.

Region_52 - Gyrus Rectus, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: gyrus rectus

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423171

ID:: 301423171

SRA Run Selector

Select item 3014231705.

Region_40 - Cerebellum, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: cerebellum

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423170

ID:: 301423170

SRA Run Selector

Select item 3014231696.

Region_31 - Putamen, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: putamen

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423169

ID:: 301423169

SRA Run Selector

Select item 3014231687.

Region_27 - Central Medial Thalamic Nuclei, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: central medial thalamic nuclei (contains nucleus medialis dorsalis fasciculosis, commissural nucleus, paraventricular thalamic nucleus, reuniens thalamic nucleus, cucullaris nucleus, paratenial thalamic nucleus)

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423168

ID:: 301423168

SRA Run Selector

Select item 3014231678.

Region_13 - Medial Superior Temporal Gyrus, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: medial superior temporal gyrus (secondary auditory cortex)

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423167

ID:: 301423167

SRA Run Selector

Select item 3014231669.

Region_12 - White Matter, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: white matter

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423166

ID:: 301423166

SRA Run Selector

Select item 30142316510.

Region_10 - Internal Globus Pallidus, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: internal globus pallidus

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423165

ID:: 301423165

SRA Run Selector

Select item 30142316411.

Region_3 - Occipital Pole, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: occipital pole, Internal calcarine sulcus, (primary visual cortex V1)

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423164

ID:: 301423164

SRA Run Selector

Select item 30142316312.

Region_1 - Posterior Precentral Gyrus, Brain1, Input

Organism:: Homo sapiens

Source name:: Female Brain: posterior precentral gyrus (primary motor cortex)

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BEDGRAPH, BW, TXT

Sample

Accession:: GSM1423163

ID:: 301423163

SRA Run Selector

Select item 30111926013.

Rattus_Norvegicus - Whole Brain (24hr PMD), H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Whole brain 24 hr post mortem delay

Platform:: GPL16288
Series:: GSE40465

Download data: BED, BW

Sample

Accession:: GSM1119260

ID:: 301119260

SRA Run Selector

Select item 30111925914.

Rattus_Norvegicus - Whole Brain (16hr PMD), H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Whole brain 16 hr post mortem delay

Platform:: GPL16288
Series:: GSE40465

Download data: BED, BW

Sample

Accession:: GSM1119259

ID:: 301119259

SRA Run Selector

Select item 30111925815.

Rattus_Norvegicus - Whole Brain (8hr PMD), H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Whole brain 8 hr post mortem delay

Platform:: GPL16288
Series:: GSE40465

Download data: BED, BW

Sample

Accession:: GSM1119258

ID:: 301119258

SRA Run Selector

Select item 30111925716.

Rattus_Norvegicus - Whole Brain (0hr PMD), H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Whole brain 0 hr post mortem delay

Platform:: GPL16288
Series:: GSE40465

Download data: BED, BW

Sample

Accession:: GSM1119257

ID:: 301119257

SRA Run Selector

Select item 30111925617.

Region_88 - Thalamus and Pulvinar (whole), Brain6, H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Female Brain: thalamus/pulvinar (whole)

Platform:: GPL16288
Series:: GSE40465

Download data: BEDGRAPH, TXT

Sample

Accession:: GSM1119256

ID:: 301119256

SRA Run Selector

Select item 30111925518.

Region_74 - Superior Occipital Gyrus, Brain6, H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Female Brain: superior occipital gyrus

Platform:: GPL16288
Series:: GSE40465

Download data: BEDGRAPH, TXT

Sample

Accession:: GSM1119255

ID:: 301119255

SRA Run Selector

Select item 30111926219.

Mus_Musculus - Cerebellum, H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Cerebellum

Platform:: GPL11154
Series:: GSE40465

Download data: BED, BW

Sample

Accession:: GSM1119262

ID:: 301119262

SRA Run Selector

Select item 30111925420.

Region_40 - Cerebellum, Brain6, H3K27ac ChIP

Organism:: Homo sapiens

Source name:: Female Brain: cerebellum

Platform:: GPL16288
Series:: GSE40465

Download data: BEDGRAPH, TXT

Sample

Accession:: GSM1119254

ID:: 301119254

SRA Run Selector

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