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Items: 1 to 20 of 21

1.

Quality evaluation of Methyl Binding Domain based kits for enrichment DNA-methylation sequencing

(Submitter supplied) Purpose: to compare different Methyl Binding Domain (MBD) based kits for DNA-methylation sequencing using Reduced Representation Bisulfite Sequencing (RRBS) data for validation, and to determine whether data quality can also be derived from inherent sequence data characteristics
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154
18 Samples
Download data: TXT
Series
Accession:
GSE42790
ID:
200042790

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:
Homo sapiens
1096 Series
9927 Samples
Download data
Platform
Accession:
GPL10999
ID:
100010999

4.

PC3 [MBD MethylMiner]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050100
ID:
301050100

SRA Run Selector

5.

DU145 [MBD MethylMiner]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050099
ID:
301050099

SRA Run Selector

6.

HCT15 [MBD MethylMiner]

Organism:
Homo sapiens
Source name:
Colorectal carcinoma cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050098
ID:
301050098

SRA Run Selector

7.

PC3 [MBD MethylCap]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050097
ID:
301050097

SRA Run Selector

8.

DU145 [MBD MethylCap]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050096
ID:
301050096

SRA Run Selector

9.

HCT15 [MBD MethylCap]

Organism:
Homo sapiens
Source name:
Colorectal carcinoma cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050095
ID:
301050095

SRA Run Selector

10.

PC3 [MBD MethylCollector Ultra]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050094
ID:
301050094

SRA Run Selector

11.

DU145 [MBD MethylCollector Ultra]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050093
ID:
301050093

SRA Run Selector

12.

HCT15 [MBD MethylCollector Ultra]

Organism:
Homo sapiens
Source name:
Colorectal carcinoma cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050092
ID:
301050092

SRA Run Selector

13.

PC3 [MBD MethylCollector]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050091
ID:
301050091

SRA Run Selector

14.

DU145 [MBD MethylCollector]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050090
ID:
301050090

SRA Run Selector

15.

HCT15 [MBD MethylCollector]

Organism:
Homo sapiens
Source name:
Colorectal carcinoma cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050089
ID:
301050089

SRA Run Selector

16.

PC3 [RRBS]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL11154
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050103
ID:
301050103

SRA Run Selector

17.

PC3 [MBD MethylMagnet]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050088
ID:
301050088

SRA Run Selector

18.

DU145 [RRBS]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL11154
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050102
ID:
301050102

SRA Run Selector

19.

DU145 [MBD MethylMagnet]

Organism:
Homo sapiens
Source name:
Prostate cancer cell line
Platform:
GPL10999
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050087
ID:
301050087

SRA Run Selector

20.

HCT15 [RRBS]

Organism:
Homo sapiens
Source name:
Colorectal carcinoma cell line
Platform:
GPL11154
Series:
GSE42790
Download data: TXT
Sample
Accession:
GSM1050101
ID:
301050101

SRA Run Selector

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db=gds|term=GSE42790[Accession]|query=1|qty=2|blobid=MCID_6642e7335f31ac49117ac34a|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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