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Items: 13

1.

Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0

(Submitter supplied) The advent of high-throughput sequencing has led to an explosion of studies into the diversity, expression, processing, and lifespan of RNAs. Recently, three different high-throughput sequencing-based methods have been developed to specifically study RNAs that are in the process of being degraded. All three methods—genome-wide mapping of uncapped and cleaved transcripts (GMUCT), parallel analysis of RNA ends (PARE), and degradome sequencing—take advantage of the fact that Illumina sequencing libraries use T4 RNA ligase 1 to ligate an adapter to the 5’ end of RNAs that have a free 5’-monophosphate. more...
Organism:
Arabidopsis thaliana; Homo sapiens
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL11154 GPL13222
10 Samples
Download data: TXT
Series
Accession:
GSE47121
ID:
200047121
2.

Illumina HiSeq 2000 (Arabidopsis thaliana)

Organism:
Arabidopsis thaliana
771 Series
10958 Samples
Download data
Platform
Accession:
GPL13222
ID:
100013222
3.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
4.

K562 GMUCT B

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145334
ID:
301145334
5.

K562 GMUCT A

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145333
ID:
301145333
6.

HeLa GMUCT B

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145332
ID:
301145332
7.

HeLa GMUCT A

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145331
ID:
301145331
8.

HEK293 GMUCT B

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145330
ID:
301145330
9.

HEK293 GMUCT A

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL11154
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145329
ID:
301145329
10.

Col-0 mRNA-Seq B

Organism:
Arabidopsis thaliana
Source name:
flower bud
Platform:
GPL13222
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145336
ID:
301145336
11.

Col-0 mRNA-Seq A

Organism:
Arabidopsis thaliana
Source name:
flower bud
Platform:
GPL13222
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145335
ID:
301145335
12.

Col-0 GMUCT B

Organism:
Arabidopsis thaliana
Source name:
flower bud
Platform:
GPL13222
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145328
ID:
301145328
13.

Col-0 GMUCT A

Organism:
Arabidopsis thaliana
Source name:
flower bud
Platform:
GPL13222
Series:
GSE47121
Download data: TXT
Sample
Accession:
GSM1145327
ID:
301145327
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Supplemental Content

db=gds|term=GSE47121[Accession]|query=1|qty=3|blobid=MCID_6644e99cf6306928275175d2|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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