GEO Accession viewer

GSE34654	Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.
GSE34840	Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana
GSE35288	Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq
GSE35408	Brassinosteroid, gibberellin, and phytochrome impinge on a common transcription module in Arabidopsis
GSE35479	Nucleotidyltransferase gene HESO1
GSE35562	Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC
GSE36129	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [leaves RNA-seq]
GSE36143	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]
GSE36148	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis
GSE36469	High-thoughput Illumina RNA sequencing to identify downstream target genes of RABBIT EARS (RBE) in the flowers of Arabidopsis thaliana
GSE36846	Selection of epigenetic variation in Arabidopsis
GSE37075	Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons
GSE37159	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [RNA-seq]
GSE37160	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing
GSE38286	DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.
GSE38400	A SWI/SNF nucleosome remodeling complex acts in non-coding RNA-mediated transcriptional silencing
GSE38401	Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing (MNase-Seq)
GSE38464	Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing
GSE38612	Identification of long ncRNAs using RNA-seq in Arabidopsis
GSE38879	Identification of RVE8 target genes
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
GSE39051	Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation
GSE39097	Dual Binding of Chromomethylase Domains to H3K9me2-containing Nucleosomes Mediates DNA Methylation in Plants
GSE39214	Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis [RNA-Seq]
GSE39217	Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons
GSE39405	The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner
GSE39463	Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.
GSE40044	Small RNA sequencing from Arabidopsis adult leaves and profiling of Arabidopsis transcripts in response to flg22 peptide
GSE40209	Regulatory impact of RNA secondary structure across the Arabidopsis thaliana transcriptome
GSE40216	Study of expression changes and alternative splicing events during RPS4-mediated resistance in Arabidopsis using a temperature-inducible system which mirrors pathogen-infection
GSE40256	Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Transcript immunoprecipitation
GSE40258	Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Small RNA immunoprecipitation
GSE40259	Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant
GSE40388	Transcription profiling of Arabidopsis plants overexpressing SlHsfA3
GSE40482	Transcription profiling of Arabidopsis plants overexpressing SsCBF1
GSE40501	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.
GSE40579	RACK1 function in the miRNA pathway
GSE41143	Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing (ChIP-seq)
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis
GSE41766	A triple-HLH/bHLH Cascade Controls Cell Elongation Downstream of Multiple Hormonal and Environmental Signaling Pathways
GSE42665	Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
GSE42899	Magnesium Availability Regulates Development of Root Hairs in Arabidopsis thaliana
GSE42957	Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific incompatibility
GSE42968	Differentially regulated genes in TOR knockdown Arabidopsis lines
GSE43283	Genome-wide identification of PIF1-binding sites and direct-target genes of PIF1 transcriptional regulation in skotomorphogenesis
GSE43284	Genome-wide identification of PIF4-binding sites and direct-target genes of PIF4 transcriptional regulation in skotomorphogenesis
GSE43286	Genome-wide identification of PIF-binding sites and direct-target genes of PIF transcriptional regulation in skotomorphogenesis
GSE43412	Reconstructing de novo silencing of an active plant retrotransposon: dynamics, mechanisms, biological implications
GSE43560	Allele-specific expression in A. thaliana hybrids grown under control and drought stress conditions
GSE43616	Time-course transcriptome of wild-type Arabidopsis leaf
GSE43703	Translational landscape of photomorphogenic Arabidopsis
GSE43983	Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis
GSE44209	DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV
GSE44417	Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type
GSE44635	High-throughput RNA sequencing analysis of WT, rdm16-2 and sta1 mutants
GSE45213	Genome-wide analysis of SPL7 regulated genes in Arabidopsis
GSE45323	Genome-wide high-throughput small RNA sequence analysis of B. cinerea-infected Arabidopsis rosette leaves
GSE45368	Polymerase-IV occupancy at RNA-directed DNA methylation sites requires SHH1
GSE46226	RNA-Seq of single cells from the Arabidopsis root
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI
GSE46894	Developmental dynamics of DNA accessibility during flower development [DNaseI-Seq]
GSE46987	Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
GSE47121	Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0
GSE47453	Bisulfite-Seq profiling of wild-type Arabidopsis with two-component transgene silencing (T+S) system
GSE47490	Selection of epigenetic variation in Arabidopsis [SNP data]
GSE47722	Maternal siRNAs mediate spatial and temporal regulation of gene expression and seed development in Arabidopsis
GSE47852	Structural Variant of a Tandem Repeat-containing Silencer Locus Reveals Distinct Pol II and Pol IV-dependent Pathways of siRNA Biogenesis
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1
GSE48053	MethlyC-Seq of ibm1-4
GSE48309	Global small RNA analysis in fast-growing Arabidposis thaliana with elevated level of ATP and sugars
GSE48767	Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [RNA-seq]
GSE48769	Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [ChIP-seq]
GSE48770	Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways
GSE48793	APC/CCCS52A2 repressed phytosulfokine signaling restricts root QC cell proliferation through ERF115 degradation
GSE49090	Interplay Between Active Chromatin Marks and RNA-directed DNA Methylation in Arabidopsis thaliana
GSE49325	Characterization of stress-responsive lncRNAs in Arabidopsis thaliana
GSE49408	Alternative splicing fine-tunes transcriptome and translatome in photomorphogenic Arabidopsis [seq]
GSE49410	Alternative splicing fine-tunes transcriptome and translatome in photomorphogenic Arabidopsis
GSE49421	MethylC-Seq of idm2 single mutant and idm1idm2 double mutant
GSE49935	Transcription profiling of wild-type and epic2 mutant plants
GSE49950	Transcriptome profiling of Arabidopsis using strand-specific RNA-seq
GSE50181	Characterization of chromosomal architecture in Arabidopsis thaliana by Chromosome Conformation Capture
GSE50486	rrp6l1-2 project
GSE50597	High-resolution mapping of ribosome footprints from Arabidopsis thaliana
GSE50691	DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [Bisulfite-Seq]
GSE50719	DNA Topoisomerase 1a Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [RNA-Seq]
GSE50720	DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis
GSE50942	The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis
GSE50956	Next-generation sequencing analyses of the differently expressed genes of wild type and atcep1 mutant Arabidopsis thaliana
GSE51069	The 3′-tag digital gene expression library construction and Illumina sequencing analysis of Wild Type and SPL-/- ovules with placenta Transcriptomes
GSE51119	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal [RNA-seq]
GSE51121	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal
GSE51304	Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
GSE51762	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [BS-Seq]
GSE51763	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [RNA-Seq]
GSE51764	Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Pattern
GSE51770	Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [ChIP-Seq]
GSE51772	Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [RNA-Seq]
GSE51773	Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis
GSE51879	Transcriptomic analysis of WT and larp1 mutant 21 days old seedling at 20°C or following a heat stress (15 min at 38°C)
GSE52041	SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation
GSE52175	Genomewide identification of LHY binding targets.
GSE52342	miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis [PARE-seq]
GSE52400	BABY BOOM (BBM) ChIP-seq in Arabidopsis somatic embryo tissue
GSE52407	Analysis of the RDR6-dependent ein5 ski2 transcriptome profile in Arabidopsis
GSE52408	Analysis of the RDR6-dependent small RNA profile in ein5 ski2 in Arabidopsis
GSE52409	Analysis of the RDR6-dependent ein5 ski2 profile in Arabidopsis
GSE52805	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: BS-seq of Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm
GSE52806	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: allele specific mRNA-seq expression profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm
GSE52807	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: small RNA-seq profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid seeds
GSE52814	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
GSE52951	miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis (small RNA-seq)
GSE52952	miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis
GSE52966	Spatiotemporal brassinosteroid signaling and antagonism with auxin control Arabidopsis root growth.
GSE52983	MethylC-Seq of Ws background wild-type (WT), ape1l-1 (Ws background), arp-1 (Col-0 background) and zdp-1 (Col-0 background) mutants
GSE53033	MethlyC-Seq of Col-0 background wild-type (WT)
GSE53322	Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
GSE53323	Mapping and dynamics of regulatory DNA in A. thaliana accessions
GSE53324	Mapping and dynamics of regulatory DNA in A. thaliana tissues and cell types across developmental transitions
GSE53484	Small RNA profiling in an Arabidopsis transgenic line overexpressing AtmiR472
GSE53642	DNA hypomethylation bypasses the interploidy hybridization barrier in Arabidopsis
GSE53673	CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part
GSE53950	TOP1α functions on nucleosome density
GSE53952	RNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids
GSE54292	DNA methylation variation in Arabidopsis has a genetic basis and appears to be involved in local adaptation
GSE54677	Transcriptional gene silencing by Arabidopsis Microrchidia homologues involves the formation of heteromers
GSE54944	Molecular mechanism of action of plant DRM de novo DNA methyltransferases
GSE55151	Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from massive sequencing of small RNAs and cleaved target RNAs
GSE55632	SKIP Confers Salt Tolerance through Controlling Gene Alternative Splicing in Arabidopsis
GSE55866	Transcriptome profiling of siliques at 4 developmental stages in Arabidopsis
GSE55884	Transcriptome profiling of Arabidopsis smg7 mutant in immune signaling blocked background
GSE55960	Chromosomal Architecture of Arabidopsis and its Implication in Transposon Intergration
GSE56117	Transcriptome Analysis of Arabidopsis thaliana and Changes of Glucosinolates Metabolism Pathway Induced by Flg22
GSE56326	RNAseq analysis of NGATHA loss and gain of function alleles
GSE56388	MethylC-Seq of ago6-2, ago4-6 and ago4-6 ago6-2 double mutants
GSE56675	Perturbation of parent-specific gene expression during interspecific hybridization
GSE56811	Characterization of miP1a/b (microProteins) overexpression plants, including a constans mutant (co-SAIL)
GSE56922	Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis
GSE57191	Small RNA accumulation in Transposable Element-silent and Transposable Element-active epigenomes
GSE57215	Detection of Pol IV-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis
GSE57487	The arf10/16 double mutant has a differential transcriptional program in response to Al stress
GSE57497	Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells [ChIP-Seq]
GSE57579	RNA-seq analysis of alternative splicing events in duplicated genes of Arabidopsis thaliana indicates considerable qualitative and quantitative divergence
GSE57690	Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana
GSE57755	Methylation Changes in Arabidopsis Mature Green Seed Parts
GSE57790	Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana
GSE57791	Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination
GSE57806	RNA Sequencing analysis of Wild Type and HID1 mutant Transcriptomes
GSE57953	Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells [RNA-seq]
GSE57954	Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells
GSE57963	Mechanism of DNA methylation-directed histone methylation by KRYPTONITE
GSE58029	The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner [RNA-Seq]
GSE58082	The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [RNA-Seq]
GSE58083	The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [ChIP-seq]
GSE58084	The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light
GSE58138	ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis
GSE58787	MethlyC-Seq of wild type (with 35S-SUC2 transgene) and idm3-1, mbd7-1 mutants (same 35S-SUC2 background)
GSE58856	A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage
GSE58857	A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage
GSE58974	Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus
GSE59154	Profiling of mRNA N6-Adenosine Methylation (m6A) in Arabidopsis
GSE59167	The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis
GSE59187	RGA binding sites in Arabidopsis thaliana seedlings
GSE59637	SEEDSTICK Is a Master Regulator of Development and Metabolism in Arabidopsis Seed Coat
GSE59639	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (smallRNA-seq)
GSE59658	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status
GSE59959	The SUVR2 associated proteins FRINGE1 and 2 are required for RdDM in Arabidopsis [Bisulfite-seq]
GSE60011	Genome-wide sequences bound by the transcription factors BLUEJAY and JACKDAW in Arabidopsis thaliana roots
GSE60084	FYRN and FYRC domains of the histone demethylase, JMJ14, mediated chromatin binding and transgene silencing through a pair of NAC transcription factors
GSE60826	Synergistic and independent actions of multiple terminal nucleotidyl transferases in 3’ tailing of small RNAs in Arabidopsis
GSE60865	Ultra-fast transcriptional responses in plants
GSE60929	Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis
GSE61061	Dormancy of green-cotyledon Col seeds matured at 20°C vs 15°C
GSE61192	The catalytically inactive Domains Rearranged Methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis
GSE61291	Identification of MOL1-dependent genes
GSE61293	Characterization of MOL1 function by transcriptional profiling of Arabidopsis inflorescence stems
GSE61362	Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis
GSE61418	Gene expression profiling study by RNA-seq in Arabidopsis thaliana infected by Vibrio vulnificus
GSE61545	Identification of CLF-regulated transcripts using strand-specific RNA-sequencing in Arabidopsis
GSE61812	Transcriptome profiling of DCP5 using strand-specific RNA-sequencing in Arabidopsis
GSE62206	Whole genome methylation maps of Wild Type (WT), mutant (ddm1) and epiRILs
GSE62256	Enhanced Salicylic Acid Biosynthesis Is Involved in Heterosis for Bacterial Defense in Arabidopsis
GSE62401	Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana
GSE62602	Unveil coffee molecular response mechanisms to drought through the expression of the homeobox-leucine zipper I CAHB12
GSE62611	Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5
GSE62799	The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis [mRNA-Seq]
GSE62800	The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis [small RNA-Seq]
GSE62801	The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis
GSE63238	An Rtf2 domain-containing protein influences pre-mRNA splicing and is essential for embryonic development in Arabidopsis thaliana
GSE63462	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor [RNA-Seq]
GSE63464	Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor
GSE63757	The splicing factor PRP31 is involved in transcriptional gene silencing and stress response in Arabidopsis
GSE63879	tRNA-derived small RNAs target transposable element transcripts
GSE64381	RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants
GSE64389	RNA-directed DNA Methylation is associated with gene expression via chromosomal Interactions
GSE64475	Alterations to hormone regulated defense and stress response networks contribute to the greater growth of Arabidopsis F1 hybrids
GSE64499	MethlyC-Seq of nrpd1-3, nrpd1-12, and nrpe1-11
GSE64547	A mechanistic linkage between low CO2 and evolution of C4 photosynthesis
GSE64569	BS-seq of ros1-3, ros1-4 with wildtype col-0
GSE64600	SUVH1, a histone methyltransferase, is required for the expression of genes targeted by DNA methylation
GSE64665	Conserved Molecular Program for Root Development in Diverse Plants
GSE64740	Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)
GSE64742	Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data)
GSE64743	Hybrid Mimics and Hybrid Vigor in Arabidopsis
GSE64759	MethlyC-Seq of met18 mutant
GSE64911	Roles and Programming of Arabidopsis ARGONAUTE Proteins During Turnip Mosaic Virus Infection
GSE65056	In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs
GSE65329	REF6 recognizes specific DNA sequence to regulate H3K27me3 demethylation and organ boundary formation
GSE65685	Population epigenomics of Swedish Arabidopsis
GSE65717	Alternative RNA processing events in a double NSR mutant Arabidopsis
GSE65739	Coevolution of hormone metabolism and signaling networks expands plant adaptive plasticity
GSE66017	Effect of Chromomethylase-2 and Dicer-like-3 knockouts on DNA methylation
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans
GSE66585	Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm
GSE66599	Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses
GSE66666	Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions
GSE67216	Redundant AGO-hook platforms and AGO4-DNA interaction in polV-directed RdDM
GSE67322	Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements
GSE67613	Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances
GSE67669	The cytosolic iron-sulfur cluster assembly protein MMS19 regulates transcriptional gene silencing, DNA repair, and flowering time in Arabidopsis
GSE67776	A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [ChIP-seq]
GSE67777	A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [RNA-seq]
GSE67778	A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes
GSE68130	The effect of expression of the Agrobacterium tumefaciens virulence protein VirE3 on gene expression in Arabidopsis thaliana.
GSE68131	Methylation Profile of postmature-green-stage seed and dry seed from Arabidopsis ddcc mutant
GSE68132	Methylation Changes in Arabidopsis seed development
GSE68210	Differential gene expression analysis of Wildtype and pgp1 mutant at 16°C Long day condition
GSE68866	The Roles of Arabidopsis CDF2 in Transcriptional and Posttranscriptional Regulation of Primary MicroRNAs
GSE69167	Transcriptome profiles and comparison of Arabidopsis thaliana woody (soc1-ful) and WT (Col-0) stems.
GSE69281	MethlyC-Seq of met18-1(SALK_121963) and met18-2(SALK_147068) mutant
GSE69422	Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (ChIP-Seq)
GSE69424	Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (RNA-Seq)
GSE69425	Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice
GSE69510	Reducing Cytoplasmic Polyamine Oxidase Activity in Arabidopsis Increases Salt and Drought Tolerance by Reducing Reactive Oxygen Species Production and Increasing Defense Gene Expression.
GSE69802	Insights into the adaptive stress response of Arabidopsis thaliana to thermal stress by ribosomal profiling
GSE69904	Arginine methylation regulates widespread alternative polyadenylation
GSE70100	Identification of mRNAs Regulated in Response to Transcriptional Activation of the Arabidopsis ABA INSENSITIVE GROWTH 1 (ABIG1) Transcription Factor cDNA
GSE70455	Dynamic of DNA methylation during Arabidopsis reproduction
GSE70491	The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping
GSE70575	Photomorphogenesis of Arabidopsis seedlings is accompanied by complex alternative splicing alterations
GSE70584	MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root
GSE70796	Transcription targets of ASYMMETRIC LEAVES 2 (AS2), KANADI1 (KAN), REVOLUTA (REV) and SHOOT MERISTEMLESS (STM) genes
GSE70912	Dicer-independent RNA-directed DNA methylation in Arabidopsis [methylC-seq]
GSE70913	Dicer-independent RNA-directed DNA methylation in Arabidopsis [small RNA-seq 1]
GSE71451	Identification of MOL1-dependent genes II
GSE71517	Identification of SMXL4- and SMXL5-dependent genes in comparison to the SMAX1-dependent genes
GSE71563	Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica
GSE71564	Genome-wide dynamics of H3K27me3 and H3K4me3 during early flower development [ChIP-seq]
GSE71581	Expression profiling during early flower development [RNA-seq]
GSE71583	Early flower development
GSE71672	Dicer-independent RNA-directed DNA methylation in Arabidopsis [small RNA-seq 2]
GSE71803	Genome-wide mapping of uncapped and cleaved transcripts (GMUCT) and transcriptome of DCLs
GSE71913	Genome-wide mapping of uncapped and cleaved transcripts reveals a role for the nuclear messenger RNA cap-binding complex in plant co-translational RNA decay
GSE72280	MethlyC-Seq of Col-0 (wild type, WT), nrpd1-3, nrpe1-11, ros1-4 single mutants and ros1-4nrpd1-3 double mutant
GSE72456	Impact of URT1-mediated uridylation on small RNA tailing in Arabidopsis
GSE72458	Impact of URT1-mediated uridylation on small RNA tailing in Arabidopsis and global view of mRNA uridylation in Arabidopsis
GSE72505	The identificantion of novel miRNA targets in Arabidopsis thaliana shoots using genome-wide mapping of uncapped and cleaved transcripts (GMUCT) 2.0
GSE72706	Transcriptome-wide high-throughput deep m6A-seq reveals unique m6A methylation differential patterns among three organs in Arabidopsis
GSE72735	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [ChIP-Seq]
GSE72736	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis
GSE72770	Whole Genome Bisulfite sequencing of Arabidopsis thaliana High and Low phosphate methylomes
GSE72806	ABA is required for plant acclimation to a combination of salt and heat stress
GSE72982	Identification of small RNA loci that are synthesized by RNA-dependent RNA polymerases1/2/6
GSE72993	Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation
GSE73752	Small RNA deep sequencing of Arabidopsis DRB mutants
GSE74398	A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis
GSE74488	RNA-Seq of single cells from regenerating Arabidopsis root
GSE74551	The chromatin remodeler protein DDM1 regulates early seedling growth hybrid vigor by modulating gene expression in Arabidopsis
GSE74584	Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis I
GSE74585	Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis II
GSE74587	Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis
GSE74717	RNAseq of Arabidopsis thaliana Col-0 inflorescences
GSE74721	Deciphering the cell-specific role of Arabidopsis Argonaute 3 [RNA-seq]
GSE74722	Deciphering the cell-specific role of Arabidopsis Argonaute 3 [smallRNA-Seq]
GSE74723	Deciphering the cell-specific role of Arabidopsis Argonaute 3
GSE74841	H3K36ac is an evolutionary conserved histone modification that marks active genes in plants
GSE74897	Transcriptomic analysis of atphb3 mutant.
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation
GSE75199	Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1
GSE75377	Antagonistic Regulation of Abscisic Acid Inhibited Root Growth By Brassinosteroid is Partially Mediated by BRASSINAZOLE RESISTENT 1 suppressed ABSCISIC ACID INSENSITIVE 5 expression
GSE75640	Translatome analysis of NB-LRR immune response identifies important contributors to plant immunity in Arabidopsis.
GSE76382	Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT)
GSE76406	GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize
GSE76447	Transcriptome profiling of post-mature green seeds from Arabidopsis ddcc mutant and wild-type
GSE76577	Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana
GSE77394	EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response [ChIP-seq]
GSE77395	EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response [RNA-seq]
GSE77396	EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response
GSE77428	mRNA sequencing of Arabidopsis thaliana pdx3 mutants
GSE77486	The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence
GSE77735	Identification of Multiple Proteins Coupling Transcriptional Regulation to Genome Stability in Arabidopsis thaliana
GSE77966	MTHFD1 controls DNA methylation in Arabidopsis
GSE78088	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [miRNA-seq]
GSE78090	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing
GSE78836	Arabidopsis AtMORC4 and AtMORC7 form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes
GSE78969	Lincomycin effect on PIFq-regulated transcriptome
GSE79012	Gene expression profiling shows that combination of jazQ and phyB-9 mutations promotes additive and enhanced expression of growth- and defense-related genes
GSE79259	The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation
GSE79353	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
GSE79354	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq]
GSE79355	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana
GSE79412	FPS down-regulation alters chloroplast development and triggers an sterol-dependent induction of JA-related and Fe deficiency transcriptional responses
GSE79524	Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis
GSE79576	Arabidopsis SAURs Are Critical for Differential Light Regulation of the Development of Various Organs
GSE79676	Bisulfite-Seq and RNA-seq profiling of Arabidopsis aneuploids
GSE79708	Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq)
GSE79709	Unique cell-type specific patterns of DNA methylation in the root meristem (RNA-seq)
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem
GSE79738	Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis
GSE79780	Comparing the targets of distinct RNA Directed DNA Methylation mechanisms in Arabidopsis thaliana
GSE80050	Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana
GSE80051	Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana
GSE80052	Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana
GSE80053	Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions
GSE80054	Transcriptome-wide RNA 5-methylcytosine methylation in siliques, shoots and roots and root gene expression profiling of Arabidopsis thaliana
GSE80056	POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis
GSE80068	The SET Domain Proteins SUVH2 and SUVH9 Are Required for Pol V Occupancy at RNA-Directed DNA Methylation Loci
GSE80188	Analysis of gene expression patterns of Arabidopsis roots grown in methyl jasmonate (MeJA), cytokinin (CK), MeJA/CK- treated conditions
GSE80301	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing [RNA-seq]
GSE80302	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing [Bisulfite-seq]
GSE80303	The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing
GSE80370	Two components of the RNA-directed DNA methylation pathway associate with MORC6 and silence loci targeted by MORC6 in Arabidopsis
GSE80448	Study of expression changes during RPS4-mediated resistance in Arabidopsis using a temperature-inducible system which mirrors NLR activation II
GSE80712	Identification of microRNA targets in Arabidopsis by transcriptome profiling of wild-type and ago1-36 mutant plants
GSE81166	Arabidopsis thaliana treatments to trigger somatic embryo formation under RNAseq
GSE81200	ENAP1 is involoved in the Histone H3K23 acetylation- and EIN3- mediated ethylene response
GSE81295	Buffer composition affects ribosome footprint precision in Arabidopsis root and shoot
GSE81366	Proteome-wide identification of protein poly(ADP-ribosyl)ation targets reveals an important role of FHA domain protein DAWDLE in Arabidopsis immunity
GSE81407	Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals
GSE81618	Transcriptom analyses of Arabidopsis altered meritem program1-32 (amp1-32) mutant as well as wild-type Columbia-0 plants via next-generation sequencing (NGS).
GSE82041	Endoplasmic reticulum as a hub organizing the activities of microRNAs and a subset of endogenous siRNAs in Arabidopsis
GSE82086	Alteration In Auxin Homeostasis By Overexpression Of PINOID Kinase Causes Leaf Growth Defects In Arabidopsis thaliana
GSE83214	Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling
GSE83355	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status
GSE83361	The coi1-2 mutant has a differential transcriptional program in response to Al stress
GSE83487	Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana [sRNA]
GSE83488	Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana
GSE83557	The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
GSE83568	The Arabidopsis Polycomb Repressive Complex 1 (PRC1) components AtBMI1A, B and C impact gene networks throughout all stages of plant development
GSE83607	Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons [RNA-seq]
GSE83646	Unraveling multifaceted contributions of small regulatory RNAs to the photomorphogenic development in Arabidopsis
GSE83802	The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications
GSE84014	Mutation of S-adenosyl-methionine synthetase 3 (SAMS3) releases transcriptional silencing by reducing DNA and histone methylation in Arabidopsis
GSE84753	Transcriptomic analysis of regulatory gene expression profiles by NF-YCs, and RGL2 under paclobutrazol (PAC) condition
GSE85067	Comparative transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana
GSE85069	Comparative sRNA-Seq analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana
GSE85070	Comparative mRNA and sRNA transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana
GSE85292	The luh-4 mutant has a differential transcriptional program in response to Al stress
GSE85516	Diversification of Root Hair Development Genes in Vascular Plants
GSE85651	Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [ChIP-seq]
GSE85653	Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq]
GSE85655	Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions
GSE85847	Expression data of agl62/- and wild-type seeds at 30 hrs after pollination
GSE85848	Auxin production in the endosperm drives seed coat development in Arabidopsis
GSE85975	DNA methylation dynamics during early plant life
GSE86395	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (CPDs)
GSE86401	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (smallRNAs)
GSE86403	A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions
GSE86447	RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity
GSE86459	A global view of RNA-protein interactions reveals novel root hair cell fate regulators
GSE86498	H3K23me1 is an evolutionary conserved histone modification associated with CG DNA methylation in Arabidopsis
GSE86581	Revealing global translational reprogramming as a fundamental layer of immune regulation in plants
GSE86583	Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
GSE86787	Exogenous Transposable Elements Circumvent Homology Permitting the Dissection of Expression Dependent Silencing
GSE87170	DNA methylation inheritance across generations
GSE87329	Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered CO2 availability
GSE87352	Transcriptomic profilling of Arabidopsis thaliana roots infected by Fusarium oxysporum
GSE87415	Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis
GSE87421	Arabidopsis thaliana sixth generation of mutant fas2 MNase-seq
GSE87851	Differential gene expression analysis of Wildtype and NMD deficient mutants grown at 23°C Long day condition
GSE87880	Transcriptomic analysis of Col and ein3eil1 under Cd stress.
GSE88790	N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana.
GSE89356	H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity [RNA-seq]
GSE89357	H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity [ChIP-seq]
GSE89358	H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity
GSE89617	RNA-seq of Arabidopsis thaliana Col-0 siliques
GSE89850	Next Generation Sequencing Facilitates Quantitative Analysis of nf-ycQ in Arabidopsis thaliana seedlings Transcriptomes
GSE89889	Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species.
GSE89894	Gene expression profiling study by RNA-seq in Arabidopsis thaliana treated with Chlorella
GSE90159	Analysis of gene expression patterns of arabidopsis whitening mutant wn1 and wild-type
GSE90167	Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems
GSE90169	Transcriptomic analysis of dorso-ventral cell-types of Arabidopsis shoot apical meristem
GSE90170	Transcriptome analysis after knocking down class III HD ZIP transcription factors in SAM
GSE90507	Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis
GSE90549	Transcriptome analysis after ectopically expressing REV in SAM epidermis
GSE91013	Small RNAs in stv-1 mutant
GSE92449	Histone lysine-to-methionine mutation reprograms the histone methylation landscape and contributes to pleiotropic development in Arabidopsis
GSE92568	Genetic influences on gene expression in Arabidopsis thaliana
GSE92611	Induced one gene overexpression and check the transcriptional expression
GSE92922	Endoplasmic reticulum as a hub organizing microRNAs and a subset of endogenous siRNAs in Arabidopsis [Ribo-Seq and RNA-Seq]
GSE93223	Plant-specific histone residue F41 restricts H3.1 distribution in heterochromatin
GSE93420	Dehydration and Fixed-Carbon Starvation of Brassinosteroid related mutants in Arabidopsis
GSE93875	An integrative analysis of different histone acetylation in ethylene response in Arabidopsis
GSE93968	Proximal methylation features associated with nonrandom changes in gene body methylation
GSE93979	The Arabidopsis Cys2/His2 zinc-finger transcription factor ZAT18 is a positive regulator of plant tolerance to drought stress
GSE94107	An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
GSE94547	The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana
GSE94576	Next Generation RNA Sequencing reveals defects in nuclear and chloroplast mRNA maturation of Arabidopsis thaliana lefko2 mutant
GSE94607	Arabidopsis CLE peptide hormones contribute to pollen development through precisely regulated transcriptomic and proteomic networks
GSE94720	Boundary Formation is an Inherent Property of Mobile Small RNA Gradients
GSE94786	A small RNA pathway mediates allelic dosage in endosperm [mRNA-seq]
GSE94787	A small RNA pathway mediates allelic dosage in endosperm [sRNA-seq]
GSE94792	A small RNA pathway mediates allelic dosage in endosperm
GSE95175	The histone H3 variant H3.3 regulates gene body DNA methylation [BiSulfite-seq]
GSE95301	Chromatin-Bound ARGONAUTE 1 Promotes Gene Transcription in Response to Various Stimuli in Arabidopsis
GSE95473	Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes [seq]
GSE95557	Compartmentalization of DNA damage response between heterochromatin and euchromatin is mediated by distinct H2A histone variants
GSE95665	Arabidopsis ZED1-related kinases mediate temperature-sensitive intersection of immune response and growth homeostasis
GSE95669	HOP family plays a major role in long term acquired thermotolerance in Arabidopsis affecting the HSR and protein QC
GSE95768	small RNA sequencing from leaf of Arabidopsis to identify tsRNA
GSE96666	Salicylic acid-dependent and -independent transcriptome changes in response to methyl-erythritol cyclodiphosphate accumulation
GSE96806	Transcription factor Interplay between LEAFY and APETALA1/ CAULIFLOWER during Floral Initiation
GSE96812	A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
GSE96834	The histone H3 variant H3.3 regulates gene body DNA methylation [ChIP-seq]
GSE96848	Identification of HDA15-PIF1 as a Key Repression Module Directing the Transcriptional Network of Seed Germination in the Dark
GSE96873	The histone H3 variant H3.3 regulates gene body DNA methylation
GSE97174	Identification of Factors Required for m6A mRNA Methylation in Arabidopsis Reveals a Role for the Conserved E3 Ubiquitin Ligase HAKAI
GSE97231	The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana [RNA-Seq]
GSE97446	Auxin responsive genes in the Arabidopsis stem
GSE97449	ARF5/MP responsive genes in the vascular cambium of Arabidopsis
GSE97500	Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
GSE97917	Small RNA (sRNA) sequencing from A. thaliana flowers
GSE98045	Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana [CPL4(Oto)]
GSE98047	Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana
GSE98141	Genome-wide identification and characterization of novel lncRNAs in Arabidopsis thaliana
GSE98162	DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis [DNA methylation]
GSE98176	RNA-Seq of epidermis and mesophyll in arabidopsis developing embryos
GSE98193	Auxin responses in the Arabidopsis stem and cambium
GSE98283	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (Bisulfite-Seq)
GSE98284	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (RNA-Seq)
GSE98285	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (miRNA-Seq)
GSE98286	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci
GSE98313	Effect of dilution on RNA seq sensitivity
GSE98389	Gene expression profiling of the octuple jazQ mycT mutant shows that the MYC transcription factors control expression of many genes mis-regulated in jazQ, and also identifies some MYC-indepedent expression changes
GSE98610	Ribosome footprints sequencing from Arabidopsis thaliana roots during Pi starvation
GSE98779	LUC7 is an U1snRNP component that plays a role in alternative splicing and terminal introns removal in plants
GSE98872	Comparative Epigenomics Reveals Hierarchical Regulation of Non-CG Methylation in Arabidopsis
GSE99283	high temp wt - High temperature Arabidopsis root transcriptome
GSE99290	Functional analysis of evening complex component LUX in Arabidopsis
GSE99396	Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding [Arabidopsis]
GSE99464	Identification of AtGRP7 targets by RIP-seq
GSE99576	Exploring the link between ER stress and autophagy in Arabidopsis
GSE99587	Identification of LEC1 binding sites in Arabidopsis bent cotyledon stage seeds
GSE99615	Identification of differentially expressed genes by RNA-seq in AtGRP7 overexpression and knockdown lines
GSE99616	Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7
GSE99639	Mnase-Seq study of Arabidopsis thaliana mutant chr5
GSE99854	Spatial control of gene expression by miR319-regulated TCP transcription factors in leaf development
GSE100010	RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis
GSE100450	mRNA sequencing of wild type Columbia and serrate-1 globular stage embryos of Arabidopsis thaliana
GSE100760	RNA-Seqs of WT and crwn1 crwn2 double mutant
GSE100965	Genome-wide maps of histone H3 acetylation (H3Ac) in wild type (WT; Columbia-0; Col) and hag1 calli
GSE100966	Global gene-expression profiles of wild type (WT; Columbia-0; Col) and hag1 in the course of de novo shoot regeneration
GSE100967	Acquisition of Pluripotency by HAG1-mediated Epigenetic Reprogramming of Key Potency Factor-encoding Loci in Arabidopsis
GSE101422	Gene expression profile during wound-induced callus formation in Arabidopsis thaliana
GSE101428	A bivalent histone reader is an epigenetic switch regulating floral phase transition
GSE101483	NPR1 REGULATES COLD ACCLIMATION VIA NOVEL INTERACTION WITH HSFA1s TRANSCRIPTION FACTOR FAMILY PROTEINS
GSE101543	Polymerases IV and V affect Pol II transcription termination
GSE101567	Global gene-expression profiles of WT Arabidopsis (Col-0), npr1-1, and hac1/5 treated with water or INA
GSE101570	Genome-wide maps of histone H3 acetylation (H3Ac) in wild type (WT; Col-0), npr1-1, and hac1/5
GSE101572	HTS-Seq analysis of wild type (WT; Col-0), npr1-1, and hac1/5
GSE101782	Powerdress Mediated Histone Deacetylation Is Essential For Thermomorphogenesis In Arabidopsis Thaliana
GSE101952	Regulatory DNA in A. thaliana can tolerate high levels of sequence divergence
GSE102236	miRNA mobility is a highly regulated process in plants
GSE102302	A Tripartite Amplification Loop Involving WRKY75, Salicylic Acid and ROS Accelerates Leaf Senescence in Arabidopsis
GSE102694	RNA-seq Analysis of the stem of Wild Type and CEP1 Transcriptomes
GSE102984	ENAP1 is involoved in the EIN3- mediated ethylene response
GSE102988	Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling in ein3eil1 mutant plants
GSE103054	AUXIN RESPONSE FACTOR3 Integrates the Functions of AGAMOUS and Auxin to Repress Cytokinin Biosynthesis and Signaling in Floral Meristem Determinacy
GSE103112	GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize
GSE103422	Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing [ncRNA-seq]
GSE103423	Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing
GSE103762	The Arabidopsis transcription factor TCP5 during petal and inflorescence development
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)
GSE104115	Cell layer specific AGO1-loaded sRNA from Arabidopsis thaliana dcl234 triple mutant
GSE104117	Cell layer specific AGO1-loaded sRNA from dcl234 triple mutant; Cell layer specific and polysome associated RNA from Col0 and hyl1 mutant roots.
GSE104240	Stable transgenerational epigenetic inheritance requires a DNA methylation-sensing circuit
GSE104456	Profiling of cytosine DNA-methylation in the Arabidopsis CAF-1 mutant fas2
GSE104483	Next Generation Sequencing of Wild Type and AtSRT1 transgene plants Transcriptomes
GSE104590	Verticillium dahliae-Arabidopsis interaction causes changes in gene expression profiles and jasmonate levels on different time scales
GSE104916	Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk
GSE105000	Genome-wide bisulphite sequencing of Arabidopsis thaliana embryo and endosperm
GSE106223	The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5
GSE106615	Genome-wide transcriptomic analysis of Arabdiopsis mutants controling nuclear size in comparison to the wildtype
GSE106970	The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis [lncRNA-seq]
GSE106971	The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis [small RNA-seq]
GSE106972	The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis
GSE107260	INDUCER OF CBF EXPRESSION 1 is a male fertility regulator impacting anther dehydration in Arabidopsis
GSE107699	Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis
GSE107778	RNA-Seq Analysis of Genes Differentially Expressed across temporal and spatial deposition of wall ingrowths in Arabidopsis Phloem Parenchyma Transfer Cells
GSE107883	Functional analysis of HD2C in Arabidopsis
GSE108162	B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis
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