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Items: 1 to 20 of 48

1.

Nucleosome dynamics in human colorectal cancer specimens reveal activation of a CNOT3-regulated pathway of embryonic stem cell self-renewal

(Submitter supplied) Temporal chromatin dynamics can reveal transcriptional determinants of cell differentiation, and we reasoned that dynamic changes in nucleosome configuration might similarly disclose transcriptional regulators in cancer. To this end, we identified thousands of cis-regulatory sites where chromatin marks and configuration in human CRCs differed from those in their respective precursor adenomas. (based on H3K4me2 mark). more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL18573 GPL11154
45 Samples
Download data: BED, FPKM_TRACKING, TXT, WIG
Series
Accession:
GSE66216
ID:
200066216

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12044 Series
332532 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10425 Series
180579 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

HCT116 - CNOT3_ChIPseq

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL11154
Series:
GSE66216
Download data: BED
Sample
Accession:
GSM1617391
ID:
301617391

SRA Run Selector

5.

Carcinoma_10_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617390
ID:
301617390

SRA Run Selector

6.

Carcinoma_9_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617389
ID:
301617389

SRA Run Selector

7.

Carcinoma_8_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617388
ID:
301617388

SRA Run Selector

8.

Carcinoma_7_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617387
ID:
301617387

SRA Run Selector

9.

Carcinoma_6_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617386
ID:
301617386

SRA Run Selector

10.

Carcinoma_4_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617385
ID:
301617385

SRA Run Selector

11.

Carcinoma_3_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617384
ID:
301617384

SRA Run Selector

12.

Carcinoma_1_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colorectal carcinoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617383
ID:
301617383

SRA Run Selector

13.

Adenoma_10_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617382
ID:
301617382

SRA Run Selector

14.

Adenoma_9_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617381
ID:
301617381

SRA Run Selector

15.

Adenoma_8_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617380
ID:
301617380

SRA Run Selector

16.

Adenoma_7_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617379
ID:
301617379

SRA Run Selector

17.

Adenoma_6_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617378
ID:
301617378

SRA Run Selector

18.

Adenoma_4_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617377
ID:
301617377

SRA Run Selector

19.

Adenoma_3_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617376
ID:
301617376

SRA Run Selector

20.

Adenoma_1_Input - Input_DNA

Organism:
Homo sapiens
Source name:
Primary colonic adenoma, snap-frozen tissue
Platform:
GPL11154
Series:
GSE66216
Download data
Sample
Accession:
GSM1617375
ID:
301617375

SRA Run Selector

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