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Items: 11

1.

Disease-Associated SNPs From non-Coding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells [ChIP-Seq]

(Submitter supplied) We applied ChIP-Seq on two histone marks: H3K4me1 and H3K27ac in healthy human neutrophils. After peak calling, we obtained the peak regions enriched with H3K4me1 and H3K27ac histone marks and identifed aciive enhancers (H3K27ac+/H3K4me1+) and H3K27ac active enhancers (H3K27ac+/H3K4me1-) in human neutrophils and checked whether those enhancers are located in the LD blocks of 22 SNPs associtated with Juvenile Idiopathic Arthritis.
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL16791
9 Samples
Download data: BROADPEAK
Series
Accession:
GSE66896
ID:
200066896

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2500 (Homo sapiens)

Organism:
Homo sapiens
11830 Series
336732 Samples
Download data
Platform
Accession:
GPL16791
ID:
100016791

3.

JB8 input DNA

Organism:
Homo sapiens
Source name:
Neutrophil
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633877
ID:
301633877

SRA Run Selector

4.

JB8 H3K27ac_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K27ac
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633876
ID:
301633876

SRA Run Selector

5.

JB8 H3K4me1_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K4me1
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633875
ID:
301633875

SRA Run Selector

6.

JB7 input DNA

Organism:
Homo sapiens
Source name:
Neutrophil
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633874
ID:
301633874

SRA Run Selector

7.

JB7 H3K27ac_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K27ac
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633873
ID:
301633873

SRA Run Selector

8.

JB7 H3K4me1_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K4me1
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633872
ID:
301633872

SRA Run Selector

9.

JB6 input DNA

Organism:
Homo sapiens
Source name:
Neutrophil
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633871
ID:
301633871

SRA Run Selector

10.

JB6 H3K27ac_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K27ac
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633870
ID:
301633870

SRA Run Selector

11.

JB6 H3K4me1_ChIPSeq

Organism:
Homo sapiens
Source name:
Neutrophil, Chromatin IP against H3K4me1
Platform:
GPL16791
Series:
GSE66896 GSE66898
Download data
Sample
Accession:
GSM1633869
ID:
301633869

SRA Run Selector

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