GSE67758[Accession] - GEO DataSets - NCBI

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Select item 2000677581.

Dual RNA-seq – High-resolution comparative Dual RNA-seq time-course

(Submitter supplied) Bacteria possess many small noncoding RNAs whose regulatory roles in pathogenesis are little understood due to a paucity of macroscopic phenotypes in standard virulence assays. Here, we use a novel Dual RNA-seq approach for a single-step simultaneous RNA profiling in both pathogen and host to reveal molecular phenotypes of sRNAs during infection with Salmonella Typhimurium. We identify a new PhoP/Q-activated small RNA which upon bacterial internalization acts to temporally control the expression of both, invasion-associated effectors and virulence genes required for intracellular survival. more...

Organism:: Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL18573 GPL20051
51 Samples

Download data: CSV

Series

Accession:: GSE67758

ID:: 200067758

PubMed Similar studies SRA Run Selector

Select item 1000200512.

Illumina NextSeq 500 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

Organism:: Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

7 Series
94 Samples

Platform

Accession:: GPL20051

ID:: 100020051

Select item 1000185733.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12044 Series
332532 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 3019248044.

Mock 24 h replicate 3

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924804

ID:: 301924804

SRA Run Selector

Select item 3019248035.

Mock 24 h replicate 2

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924803

ID:: 301924803

SRA Run Selector

Select item 3019248026.

Mock 24 h replicate 1

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924802

ID:: 301924802

SRA Run Selector

Select item 3019248017.

Mock 16 h replicate 3

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924801

ID:: 301924801

SRA Run Selector

Select item 3019248008.

Mock 16 h replicate 2

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924800

ID:: 301924800

SRA Run Selector

Select item 3019247999.

Mock 16 h replicate 1

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924799

ID:: 301924799

SRA Run Selector

Select item 30192479810.

Mock 8 h replicate 3

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924798

ID:: 301924798

SRA Run Selector

Select item 30192479711.

Mock 8 h replicate 2

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924797

ID:: 301924797

SRA Run Selector

Select item 30192479612.

Mock 8 h replicate 1

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924796

ID:: 301924796

SRA Run Selector

Select item 30192479513.

Mock 4 h replicate 3

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924795

ID:: 301924795

SRA Run Selector

Select item 30192479414.

Mock 4 h replicate 2

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924794

ID:: 301924794

SRA Run Selector

Select item 30192479315.

Mock 4 h replicate 1

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924793

ID:: 301924793

SRA Run Selector

Select item 30192479216.

Mock 2 h replicate 3

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924792

ID:: 301924792

SRA Run Selector

Select item 30192479117.

Mock 2 h replicate 2

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924791

ID:: 301924791

SRA Run Selector

Select item 30192479018.

Mock 2 h replicate 1

Organism:: Homo sapiens

Source name:: cell culture infection model

Platform:: GPL18573
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924790

ID:: 301924790

SRA Run Selector

Select item 30192478919.

Wild-type infection 24 h replicate 3

Organism:: Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: cell culture infection model

Platform:: GPL20051
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924789

ID:: 301924789

SRA Run Selector

Select item 30192478820.

Wild-type infection 24 h replicate 2

Organism:: Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Source name:: cell culture infection model

Platform:: GPL20051
Series:: GSE60144 GSE67758

Sample

Accession:: GSM1924788

ID:: 301924788

SRA Run Selector

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