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Items: 13

1.

MCPyV ST, MAX and the TRRAP complex cooperate to bind to Transcription Start Sites

(Submitter supplied) To determine if MCPyV ST was recruited to chromatin together with MAX and the TRRAP complex, we performed chromatin immunoprecipitation (ChIP) using the validated antibodies to MCPyV ST produced in our lab, HA tagged ST, MAX and EP400 followed by next generation sequencing. De novo DNA motif analysis revealed that the canonical E-box MYC target sequence was the most frequently observed motif. Metagene analysis revealed that antibodies to MAX, EP400, ST (Ab5) and HA tagged ST showed strong enrichment in transcription start site (TSS). more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL18573 GPL11154
10 Samples
Download data: BED, TXT, WIG
Series
Accession:
GSE69877
ID:
200069877

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12044 Series
332532 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10425 Series
180579 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

H3K4me3_ChIP-seq

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL18573
Series:
GSE69877 GSE69878
Download data: WIG
Sample
Accession:
GSM1711864
ID:
301711864

SRA Run Selector

5.

Input DNA rep3

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL18573
Series:
GSE69877 GSE69878
Download data
Sample
Accession:
GSM1711863
ID:
301711863

SRA Run Selector

6.

Max_ChIP-seq rep2

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711862
ID:
301711862

SRA Run Selector

7.

EP400_ChIP-seq rep2

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711861
ID:
301711861

SRA Run Selector

8.

ST_ChIP-seq

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711860
ID:
301711860

SRA Run Selector

9.

Input DNA rep2

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data
Sample
Accession:
GSM1711859
ID:
301711859

SRA Run Selector

10.

Max_ChIP-seq rep1

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711858
ID:
301711858

SRA Run Selector

11.

EP400_ChIP-seq rep1

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711857
ID:
301711857

SRA Run Selector

12.

ST-HA_ChIP-seq

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data: BED, TXT
Sample
Accession:
GSM1711856
ID:
301711856

SRA Run Selector

13.

Input DNA rep1

Organism:
Homo sapiens
Source name:
Merkel cell carcinoma cell line
Platform:
GPL11154
Series:
GSE69877 GSE69878
Download data
Sample
Accession:
GSM1711855
ID:
301711855

SRA Run Selector

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