GSE74072[Accession] - GEO DataSets - NCBI

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Select item 2000740721.

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

(Submitter supplied) We recently used in situ Hi-C to create kilobase-resolution 3D maps of mammalian genomes. Here, we combine these with new Hi-C, microscopy, and genome-editing experiments to study the physical structure of chromatin fibers, domains, and loops. We find that the observed contact domains are inconsistent with the equilibrium state for an ordinary condensed polymer. Combining Hi-C data and novel mathematical theorems, we show that contact domains are also not consistent with a fractal globule. more...

Organism:: Homo sapiens

Type:: Other

4 related Platforms
74 Samples

Download data: TXT

Series

Accession:: GSE74072

ID:: 200074072

SRA Run Selector

Select item 1000207952.

HiSeq X Ten (Homo sapiens)

Organism:: Homo sapiens

1966 Series
34225 Samples

Platform

Accession:: GPL20795

ID:: 100020795

Select item 1000185733.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12044 Series
332532 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000167914.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11877 Series
340477 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 1000155205.

Illumina MiSeq (Homo sapiens)

Organism:: Homo sapiens

1128 Series
35843 Samples

Platform

Accession:: GPL15520

ID:: 100015520

Select item 3019091666.

SanbornRao-2015-HIC046

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909166

ID:: 301909166

SRA Run Selector

Select item 3019091657.

SanbornRao-2015-HIC045

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909165

ID:: 301909165

SRA Run Selector

Select item 3019091648.

SanbornRao-2015-HIC044

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909164

ID:: 301909164

SRA Run Selector

Select item 3019091239.

SanbornRao-2015-HIC003

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909123

ID:: 301909123

SRA Run Selector

Select item 30190912210.

SanbornRao-2015-HIC002

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909122

ID:: 301909122

SRA Run Selector

Select item 30190912111.

SanbornRao-2015-HIC001

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL16791
Series:: GSE74072

Sample

Accession:: GSM1909121

ID:: 301909121

SRA Run Selector

Select item 30190913112.

SanbornRao-2015-HIC011

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909131

ID:: 301909131

SRA Run Selector

Select item 30190913013.

SanbornRao-2015-HIC010

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909130

ID:: 301909130

SRA Run Selector

Select item 30190912914.

SanbornRao-2015-HIC009

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909129

ID:: 301909129

SRA Run Selector

Select item 30190912815.

SanbornRao-2015-HIC008

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909128

ID:: 301909128

SRA Run Selector

Select item 30190912716.

SanbornRao-2015-HIC007

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909127

ID:: 301909127

SRA Run Selector

Select item 30190912617.

SanbornRao-2015-HIC006

Organism:: Homo sapiens

Source name:: B-lymphoblastoids

Platform:: GPL15520
Series:: GSE74072

Sample

Accession:: GSM1909126

ID:: 301909126

SRA Run Selector

Select item 30190919518.

SanbornRao-2015-HIC005_Hi-C2

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL18573
Series:: GSE74072

Sample

Accession:: GSM1909195

ID:: 301909195

SRA Run Selector

Select item 30190919319.

SanbornRao-2015-HIC073

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL18573
Series:: GSE74072

Sample

Accession:: GSM1909193

ID:: 301909193

SRA Run Selector

Select item 30190919220.

SanbornRao-2015-HIC072

Organism:: Homo sapiens

Source name:: haploid fibroblast-like

Platform:: GPL18573
Series:: GSE74072

Sample

Accession:: GSM1909192

ID:: 301909192

SRA Run Selector

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