GSE82236[Accession] - GEO DataSets - NCBI

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Items: 15

Select item 2000822361.

Whole-transcriptome profilings between a pair of HCA7-derived KRAS-wildtype cetuximab sensitive and resistant colon cancer cells from 3D culture

(Submitter supplied) We report the results of RNA-Seq and small RNA-Seq from a pair of HCA7-derived, KRAS wildtype CC and CC-CR cultured in 3D. A total of 361 genes showed more than a two-fold change in expression (false-discovery rate [FDR] - adjusted p<0.01) between CC-CR and CC; there were 141 transcripts upregulated and 220 transcripts downregulated in CC-CR compared to CC. Small RNA-Seq detected 7 miRNAs upregulated and 24 miRNAs downregulated in CC-CR cells compared to CC cells (fold change>2, FDR<0.01). more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL11154 GPL18573
12 Samples

Download data: TXT

Series

Accession:: GSE82236

ID:: 200082236

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000185732.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12012 Series
331330 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10417 Series
180506 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3021869494.

RNA-seq CC-CR rep3

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186949

ID:: 302186949

SRA Run Selector

Select item 3021869485.

RNA-seq CC-CR rep2

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186948

ID:: 302186948

SRA Run Selector

Select item 3021869476.

RNA-seq CC-CR rep1

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186947

ID:: 302186947

SRA Run Selector

Select item 3021869467.

RNA-seq CC rep3

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186946

ID:: 302186946

SRA Run Selector

Select item 3021869458.

RNA-seq CC rep2

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186945

ID:: 302186945

SRA Run Selector

Select item 3021869449.

RNA-seq CC rep1

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL18573
Series:: GSE82236

Sample

Accession:: GSM2186944

ID:: 302186944

SRA Run Selector

Select item 30218695510.

miRNA-seq CC-CR rep3

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186955

ID:: 302186955

SRA Run Selector

Select item 30218695411.

miRNA-seq CC-CR rep2

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186954

ID:: 302186954

SRA Run Selector

Select item 30218695312.

miRNA-seq CC-CR rep1

Organism:: Homo sapiens

Source name:: HCA-7 derived CC-CR subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186953

ID:: 302186953

SRA Run Selector

Select item 30218695213.

miRNA-seq CC rep3

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186952

ID:: 302186952

SRA Run Selector

Select item 30218695114.

miRNA-seq CC rep2

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186951

ID:: 302186951

SRA Run Selector

Select item 30218695015.

miRNA-seq CC rep1

Organism:: Homo sapiens

Source name:: HCA-7 derived CC subline

Platform:: GPL11154
Series:: GSE82236

Sample

Accession:: GSM2186950

ID:: 302186950

SRA Run Selector

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