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Items: 1 to 20 of 57

1.

PAX3-FOXO1 establishes myogenic super enhancers [RMS Chip-seq]

(Submitter supplied) The fusion transcription factor PAX3-FOXO1 drives oncogenesis in a subset of rhabdomyosarcomas, however the mechanisms by which it remodels chromatin are unknown. We find PAX3-FOXO1 reprograms the cis-regulatory landscape by inducing super enhancers (SEs), in collaboration with master transcription factors MYOG, MYOD and MYCN. This myogenic SE circuitry is consistent across cell lines and primary tumors. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL18573 GPL11154
54 Samples
Download data: BED
Series
Accession:
GSE83726
ID:
200083726

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12012 Series
331330 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10417 Series
180506 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

SCMC P3F

Organism:
Homo sapiens
Source name:
RMS cell line with PAX3-FOXO1
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM3187615
ID:
303187615

SRA Run Selector

5.

RH3 P3F

Organism:
Homo sapiens
Source name:
RMS cell line with PAX3-FOXO1
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM3187614
ID:
303187614

SRA Run Selector

6.

RH5 DNase rep3

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1, MYCN amp
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214120
ID:
302214120

SRA Run Selector

7.

RH5 DNase rep2

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1, MYCN amp
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214119
ID:
302214119

SRA Run Selector

8.

RH5 DNase rep1

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1, MYCN amp
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214118
ID:
302214118

SRA Run Selector

9.

RH4 DNase rep3

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214103
ID:
302214103

SRA Run Selector

10.

RH4 DNase rep2

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214102
ID:
302214102

SRA Run Selector

11.

RH4 DNase rep1

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1
Platform:
GPL11154
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214101
ID:
302214101

SRA Run Selector

12.

SCMC input

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1, MYCN amp
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data
Sample
Accession:
GSM2214136
ID:
302214136

SRA Run Selector

13.

SCMC H3K27ac

Organism:
Homo sapiens
Source name:
RMS cell line, PAX3-FOXO1, MYCN amp
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214135
ID:
302214135

SRA Run Selector

14.

RMS238 input

Organism:
Homo sapiens
Source name:
RMS primary tumor, PAX3-FOXO1
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data
Sample
Accession:
GSM2214134
ID:
302214134

SRA Run Selector

15.

RMS238 H3K27ac

Organism:
Homo sapiens
Source name:
RMS primary tumor, PAX3-FOXO1
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214133
ID:
302214133

SRA Run Selector

16.

RMS237 input

Organism:
Homo sapiens
Source name:
RMS primary tumor, HRAS
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data
Sample
Accession:
GSM2214132
ID:
302214132

SRA Run Selector

17.

RMS237 H3K27ac

Organism:
Homo sapiens
Source name:
RMS primary tumor, HRAS
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214131
ID:
302214131

SRA Run Selector

18.

RMS216 input

Organism:
Homo sapiens
Source name:
RMS primary tumor, KRAS, PIK3CA
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data
Sample
Accession:
GSM2214130
ID:
302214130

SRA Run Selector

19.

RMS216 H3K27ac

Organism:
Homo sapiens
Source name:
RMS primary tumor, KRAS, PIK3CA
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data: BED
Sample
Accession:
GSM2214129
ID:
302214129

SRA Run Selector

20.

RMS209 input

Organism:
Homo sapiens
Source name:
RMS primary tumor, PAX3-FOXO1, MYCN amp
Platform:
GPL18573
Series:
GSE83726 GSE83728
Download data
Sample
Accession:
GSM2214128
ID:
302214128

SRA Run Selector

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