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Items: 1 to 20 of 42

1.

The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression

(Submitter supplied) Genome-wide association studies (GWAS) have identified a great number of non-coding risk variants for colorectal cancer (CRC). To date, the majority of these variants have not been functionally studied. Identification of allele-specific transcription factor (TF) binding is of great importance to understand regulatory consequences of such variants. A recently developed proteome-wide analysis of disease-associated SNPs (PWAS) enables identification of DNA-TF interactions in an unbiased fashion. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other
Platforms:
GPL11154 GPL18573
39 Samples
Download data: BEDGRAPH, BW
Series
Accession:
GSE83968
ID:
200083968

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12044 Series
332532 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10425 Series
180579 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

COLO320_AA_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224619
ID:
302224619

SRA Run Selector

5.

COLO320_GA_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224618
ID:
302224618

SRA Run Selector

6.

COLO320_GG_DCLK3

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224617
ID:
302224617

SRA Run Selector

7.

COLO320_rs35149869_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224616
ID:
302224616

SRA Run Selector

8.

SNU175_rs35149869_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224615
ID:
302224615

SRA Run Selector

9.

COLO320_rs1800734_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224614
ID:
302224614

SRA Run Selector

10.

SNU175_rs1800734_genomic

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224613
ID:
302224613

SRA Run Selector

11.

COLO320_rs35149869_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224612
ID:
302224612

SRA Run Selector

12.

SNU175_rs35149869_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224611
ID:
302224611

SRA Run Selector

13.

COLO320_rs1800734_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224610
ID:
302224610

SRA Run Selector

14.

SNU175_rs1800734_rtPCR

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BW
Sample
Accession:
GSM2224609
ID:
302224609

SRA Run Selector

15.

COLO320_AA_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224608
ID:
302224608

SRA Run Selector

16.

COLO320_AA_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224607
ID:
302224607

SRA Run Selector

17.

COLO320_GA_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224606
ID:
302224606

SRA Run Selector

18.

COLO320_GA_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224605
ID:
302224605

SRA Run Selector

19.

COLO320_GG_rs1800734_4C_2

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224604
ID:
302224604

SRA Run Selector

20.

COLO320_GG_rs1800734_4C_1

Organism:
Homo sapiens
Source name:
Colorectal cancer cell line
Platform:
GPL18573
Series:
GSE83968
Download data: BEDGRAPH
Sample
Accession:
GSM2224603
ID:
302224603

SRA Run Selector

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