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Items: 20

1.

Profiling in vivo Bone Lesion and ex vivo Bone-In-Culture Array Samples by Next-Generation Sequencing

(Submitter supplied) Based on RNA-seq, we performed transcriptomic profiling to examine the similarities or differences between BICA (bone-in-culture array) and IVBL (in vivo bone lesion). CIBERSORT analysis reveals that the major local cellular components are comparable between BICA and IVBL, but differ dramatically in orthotopic tumors. Principle component analysis of human RNAs indicated that the transcriptomic profiles of cancer cells in BICA are more closely mimicking IVBL, as compared to cancer cells in 2D and in orthotopic tumors. more...
Organism:
Mus musculus; Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL18573 GPL19415
17 Samples
Download data: RDATA
Series
Accession:
GSE84114
ID:
200084114

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens; Mus musculus)

Organism:
Homo sapiens; Mus musculus
95 Series
1649 Samples
Download data
Platform
Accession:
GPL19415
ID:
100019415

3.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12045 Series
332544 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

4.

MCF-7, rep4

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cells
Platform:
GPL18573
Series:
GSE84114
Download data
Sample
Accession:
GSM2227410
ID:
302227410

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5.

MCF-7, rep3

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cells
Platform:
GPL18573
Series:
GSE84114
Download data
Sample
Accession:
GSM2227409
ID:
302227409

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6.

MCF-7, rep2

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cells
Platform:
GPL18573
Series:
GSE84114
Download data
Sample
Accession:
GSM2227408
ID:
302227408

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7.

MCF-7, rep1

Organism:
Homo sapiens
Source name:
MCF-7 breast cancer cells
Platform:
GPL18573
Series:
GSE84114
Download data
Sample
Accession:
GSM2227407
ID:
302227407

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8.

IVBL, rep4

Organism:
Homo sapiens; Mus musculus
Source name:
xenograft bone lesion
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227423
ID:
302227423

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9.

IVBL, rep3

Organism:
Homo sapiens; Mus musculus
Source name:
xenograft bone lesion
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227422
ID:
302227422

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10.

IVBL, rep2

Organism:
Homo sapiens; Mus musculus
Source name:
xenograft bone lesion
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227421
ID:
302227421

SRA Run Selector

11.

IVBL, rep1

Organism:
Mus musculus; Homo sapiens
Source name:
xenograft bone lesion
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227420
ID:
302227420

SRA Run Selector

12.

BICA, rep6

Organism:
Homo sapiens; Mus musculus
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227419
ID:
302227419

SRA Run Selector

13.

BICA, rep5

Organism:
Mus musculus; Homo sapiens
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227418
ID:
302227418

SRA Run Selector

14.

BICA, rep4

Organism:
Homo sapiens; Mus musculus
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227417
ID:
302227417

SRA Run Selector

15.

BICA, rep3

Organism:
Homo sapiens; Mus musculus
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227416
ID:
302227416

SRA Run Selector

16.

BICA, rep2

Organism:
Homo sapiens; Mus musculus
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227415
ID:
302227415

SRA Run Selector

17.

BICA, rep1

Organism:
Homo sapiens; Mus musculus
Source name:
cancer-containing bone-in-culture array
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227414
ID:
302227414

SRA Run Selector

18.

Orth, rep3

Organism:
Mus musculus; Homo sapiens
Source name:
xenograft breast tumor
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227413
ID:
302227413

SRA Run Selector

19.

Orth, rep2

Organism:
Mus musculus; Homo sapiens
Source name:
xenograft breast tumor
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227412
ID:
302227412

SRA Run Selector

20.

Orth, rep1

Organism:
Mus musculus; Homo sapiens
Source name:
xenograft breast tumor
Platform:
GPL19415
Series:
GSE84114
Download data
Sample
Accession:
GSM2227411
ID:
302227411

SRA Run Selector

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