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Items: 7

1.

ChIP-seq of Active Histone Mark (H3K27ac) and Myogenic Regulatory Factors (MYF5 and MYOD) in Fusion Negative Rhabdomyosarcoma Cell Lines

(Submitter supplied) We performed Chip-seq analysis of Myogenic Regulatory Transcription Factors (MYF5 and MYOD) in Fusion Negative Rhabdomyosarcoma cell lines. Endogenous MYF5/H3K27ac Chip-seq was performed in Rh18 cells and MYOD-H3K27ac Chip-seq was performed in RD cells, given that these cell lines express these proteins in a mutually-exclusive manner. Analysis revealed a common subset of enhancer and promoter regions bound by these transcription factors that are enriched for cell cycle regulation and embryonic muscle development pathways. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18573
5 Samples
Download data: BED
Series
Accession:
GSE84628
ID:
200084628

SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12044 Series
332532 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

RH18 input

Organism:
Homo sapiens
Source name:
RH18 Fusion Negative Rhabdomyosarcoma cell line
Platform:
GPL18573
Series:
GSE84628 GSE84630
Download data
Sample
Accession:
GSM2243117
ID:
302243117

SRA Run Selector

4.

RH18 MYF5

Organism:
Homo sapiens
Source name:
RH18 Fusion Negative Rhabdomyosarcoma cell line
Platform:
GPL18573
Series:
GSE84628 GSE84630
Download data: BED
Sample
Accession:
GSM2243116
ID:
302243116

SRA Run Selector

5.

RH18 H3K27ac

Organism:
Homo sapiens
Source name:
RH18 Fusion Negative Rhabdomyosarcoma cell line
Platform:
GPL18573
Series:
GSE84628 GSE84630
Download data: BED
Sample
Accession:
GSM2243115
ID:
302243115

SRA Run Selector

6.

RD Fusion Negative Rhabdomyosarcoma cell line input

Organism:
Homo sapiens
Source name:
RD Fusion Negative Rhabdomyosarcoma cell line
Platform:
GPL18573
Series:
GSE84628 GSE84630
Download data
Sample
Accession:
GSM2243114
ID:
302243114

SRA Run Selector

7.

RD Fusion Negative Rhabdomyosarcoma cell line H3K27ac

Organism:
Homo sapiens
Source name:
RD Fusion Negative Rhabdomyosarcoma cell line
Platform:
GPL18573
Series:
GSE84628 GSE84630
Download data: BED
Sample
Accession:
GSM2243113
ID:
302243113

SRA Run Selector

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db=gds|term=GSE84628[Accession]|query=1|qty=2|blobid=MCID_666a945aa997087fbe1510d2|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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