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Items: 1 to 20 of 128

1.

Chromatin accessibility landscape of cutaneous T cell lymphoma and dynamic response to HDAC inhibitors

(Submitter supplied) Here, we define the landscape and dynamics of active regulatory DNA in cutaneous T cell lymphoma (CTCL) by Assay of Transposase-Accessible Chromatin (ATAC-seq). Analysis of 111 human CTCL and control samples revealed extensive chromatin signatures that distinguished leukemic vs. non-leukemic (host) CD4+ T cells in CTCL patients, vs. CD4+ T cells in healthy donors. We identify three dominant patterns of transcription factor (TF) activation that drive leukemia regulomes, as well as TF deactivations that alter host T cells in CTCL patients. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL18573
126 Samples
Download data: BED
Series
Accession:
GSE85853
ID:
200085853

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12044 Series
332532 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

Treg_Rep2

Organism:
Homo sapiens
Source name:
human Treg cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306503
ID:
302306503

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4.

Treg_Rep1

Organism:
Homo sapiens
Source name:
human Treg cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306502
ID:
302306502

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5.

Th17_Rep3

Organism:
Homo sapiens
Source name:
human Th17 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306501
ID:
302306501

SRA Run Selector

6.

Th17_Rep2

Organism:
Homo sapiens
Source name:
human Th17 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306500
ID:
302306500

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7.

Th17_Rep1

Organism:
Homo sapiens
Source name:
human Th17 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306499
ID:
302306499

SRA Run Selector

8.

Th2_Rep3

Organism:
Homo sapiens
Source name:
human Th2 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306498
ID:
302306498

SRA Run Selector

9.

Th2_Rep2

Organism:
Homo sapiens
Source name:
human Th2 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306497
ID:
302306497

SRA Run Selector

10.

Th2_Rep1

Organism:
Homo sapiens
Source name:
human Th2 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306496
ID:
302306496

SRA Run Selector

11.

Th1_Rep3

Organism:
Homo sapiens
Source name:
human Th1 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306495
ID:
302306495

SRA Run Selector

12.

Th1_Rep2

Organism:
Homo sapiens
Source name:
human Th1 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306494
ID:
302306494

SRA Run Selector

13.

Th1_Rep1

Organism:
Homo sapiens
Source name:
human Th1 cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306493
ID:
302306493

SRA Run Selector

14.

Naive_Rep4

Organism:
Homo sapiens
Source name:
human Naïve T cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306492
ID:
302306492

SRA Run Selector

15.

Naive_Rep3

Organism:
Homo sapiens
Source name:
human Naïve T cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306491
ID:
302306491

SRA Run Selector

16.

Naive_Rep2

Organism:
Homo sapiens
Source name:
human Naïve T cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306490
ID:
302306490

SRA Run Selector

17.

Naive_Rep1

Organism:
Homo sapiens
Source name:
human Naïve T cell
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2306489
ID:
302306489

SRA Run Selector

18.

Leukemic_Patient1424_Romi_Day7

Organism:
Homo sapiens
Source name:
Leukemic_Patient1424_Romi_Day7
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2285683
ID:
302285683

SRA Run Selector

19.

Leukemic_Patient1424_Romi_Day35

Organism:
Homo sapiens
Source name:
Leukemic_Patient1424_Romi_Day35
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2285682
ID:
302285682

SRA Run Selector

20.

Leukemic_Patient1424_Romi_Day28

Organism:
Homo sapiens
Source name:
Leukemic_Patient1424_Romi_Day28
Platform:
GPL18573
Series:
GSE85853
Download data
Sample
Accession:
GSM2285681
ID:
302285681

SRA Run Selector

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