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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154				HIC
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE240985	Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	BW HIC NARROWPEAK TXT	Lukas Chavez	Sep 14, 2023
GSE210601	RNA Polymerase II CTD is dispensable for transcription in vivo and required for termination	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	31	HIC WIG	Amal Makrini	Jun 21, 2023
GSE204995	C42B Capture Micro-C	Other	Homo sapiens	8	HIC	Suhn K Rhie	Jan 11, 2023
GSE204996	C42B HiC	Other	Homo sapiens	3	HIC	Suhn K Rhie	Jan 11, 2023
GSE204997	C42B Micro-C	Other	Homo sapiens	16	HIC	Suhn K Rhie	Jan 11, 2023
GSE171592	Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	101	BED HIC TXT	Pushpinder Singh Bawa	Oct 28, 2021
GSE148396	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	29	BIM BW HIC IDAT NARROWPEAK TSV TXT	Matthew Weirauch	Sep 23, 2021
GSE163061	Individual-specific functional epigenomics reveals genetic determinants of adverse metabolic effects of glucocorticoids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	177	BIGWIG HIC TXT SRA Run Selector	Chunjie Jiang	Jun 23, 2021
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE144126	In Situ on DMSO and EPZ6438 treated CD34+ HSPCs	Other	Homo sapiens	2	HIC SRA Run Selector	Xiaotian Zhang	Jan 24, 2020
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE137661	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia (ChIA-PET)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED BEDPE HIC TXT SRA Run Selector	Yijun Ruan	Dec 05, 2019
GSE137662	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDPE HIC TXT	Yijun Ruan	Dec 05, 2019
GSE118392	Integrated Paired-end Enhancer Profiling and Whole-Genome Sequencing Reveals Recurrent CCNE1 and IGF2 Enhancer Hijacking in Primary Gastric Adenocarcinoma	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54	HIC NARROWPEAK TXT WIG	Wen Fong Ooi	Oct 02, 2019
GSE126978	Hi-C from THP-1 (ENCSR669GJD)	Other	Homo sapiens	6	HIC TXT	ENCODE DCC	Mar 03, 2019
GSE126979	Hi-C from THP-1 (ENCSR748LQF)	Other	Homo sapiens	6	HIC TXT	ENCODE DCC	Mar 03, 2019
GSE105028	Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	93	BED BW HIC SRA Run Selector	Victor Corces	Aug 03, 2018
GSE102884	Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL and PDS5 proteins	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	HIC WIG SRA Run Selector	Roman R Stocsits	Dec 07, 2017
GSE71831	Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing	Other Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	101	HIC PDF TSV TXT SRA Run Selector	Miriam Huntley	Jul 19, 2016