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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 14, 2023 |
| Title |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas |
| Organism |
Homo sapiens |
| Experiment type |
Other
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37945900 |
| Submission date |
Aug 16, 2023 |
| Last update date |
Dec 14, 2023 |
| Contact name |
Lukas Chavez |
| E-mail(s) |
lchavez@sbpdiscovery.org
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| Phone |
(858)952-3775
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| Organization name |
Sanford Burnham Prebys Medical Discovery Institute
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| Department |
Cancer Genome and Epigenetics Program, NCI-Designated Cancer Center
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| Street address |
10901 North Torrey Pines Road
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (54)
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| GSM7697639 |
MB174, G4, Hi-C |
| GSM7697640 |
MB199, G4, Hi-C |
| GSM7697641 |
MB227, G4, Hi-C |
| GSM7697642 |
MB234, SHHa, Hi-C |
| GSM7697643 |
MB244, SHHa, Hi-C |
| GSM7697644 |
MB248, G3a, Hi-C |
| GSM7697645 |
MB264, G4, Hi-C |
| GSM7697646 |
MB268, SHHa, Hi-C |
| GSM7697647 |
MB274, SHHa, Hi-C |
| GSM7697648 |
MB275, SHHa, Hi-C |
| GSM7697649 |
MB277, G3b, Hi-C |
| GSM7697650 |
MB288, G3b, Hi-C |
| GSM7697651 |
D458, G3, Hi-C |
| GSM7697652 |
RCMB56-pdx, SHH, Hi-C |
| GSM7710094 |
D458 T0 rep A, pooled CRISPRi |
| GSM7710095 |
D458 T0 rep B, pooled CRISPRi |
| GSM7710096 |
D458 T21 rep A, pooled CRISPRi |
| GSM7710097 |
D458 T21 rep B, pooled CRISPRi |
| GSM7710098 |
D283 T0 rep A, pooled CRISPRi |
| GSM7710099 |
D283 T0 rep B, pooled CRISPRi |
| GSM7710100 |
D283 T21 rep A, pooled CRISPRi |
| GSM7710101 |
D283 T21 rep B, pooled CRISPRi |
| GSM7710211 |
MB018, G3a, ATAC |
| GSM7710212 |
MB091, G4, ATAC |
| GSM7710213 |
MB095, G3a, ATAC |
| GSM7710214 |
MB099, G4, ATAC |
| GSM7710215 |
MB102, SHHa, ATAC |
| GSM7710216 |
MB104, SHHa, ATAC |
| GSM7710217 |
MB106, G3a, ATAC |
| GSM7710218 |
MB136, SHHb, ATAC |
| GSM7710219 |
MB164, G3b, ATAC |
| GSM7710220 |
MB174, G4, ATAC |
| GSM7710221 |
MB199, G4, ATAC |
| GSM7710222 |
MB227, G4, ATAC |
| GSM7710223 |
MB234, SHHa, ATAC |
| GSM7710224 |
MB244, SHHa, ATAC |
| GSM7710225 |
MB247, G3a, ATAC |
| GSM7710226 |
MB248, G3a, ATAC |
| GSM7710227 |
MB264, G4, ATAC |
| GSM7710228 |
MB268, SHHa, ATAC |
| GSM7710229 |
MB274, SHHa, ATAC |
| GSM7710230 |
MB275, SHHa, ATAC |
| GSM7710231 |
MB277, G3b, ATAC |
| GSM7710232 |
MB278, G3b, ATAC |
| GSM7710233 |
MB281, G4, ATAC |
| GSM7710234 |
MB282, G4, ATAC |
| GSM7710235 |
MB288, G3b, ATAC |
| GSM7710236 |
D458, G3, ATAC |
| GSM7710237 |
RCMB56-ht, SHH, ATAC |
| GSM7713336 |
RCMB56-ht snRNA+ATAC-seq (RNA) |
| GSM7713337 |
RCMB56-ht snRNA+ATAC-seq (ATAC) |
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| This SuperSeries is composed of the following SubSeries:
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| GSE240410 |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas [Hi-C] |
| GSE240823 |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas [pooled CRISPRi] |
| GSE240830 |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas [ATAC-seq] |
| GSE240984 |
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastomas [scRNA+ATAC-seq] |
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| Relations |
| BioProject |
PRJNA1005992 |
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