GEO Browser - GEO

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59 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154	Genome binding/occupancy profiling by high throughput sequencing			TSV
GSE232283	H2A.Z histone variants facilitate HDACi-dependent removal of H3.3K27M mutant protein in paediatric high-grade glioma cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	47	TSV WIG	Jakub Mieczkowski	May 01, 2024
GSE220509	Transcriptional regulation by FOXO1 in Human endothelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BIGWIG BW MTX NARROWPEAK TSV	Shunsuke Kamei	Mar 01, 2024
GSE220144	Bone Marrow Stromal Cell Induced Chromatin Remodeling and Associated Transcriptional Changes in Multiple Myeloma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BIGWIG BW MTX NARROWPEAK TSV	Mehmet K. Samur	Feb 25, 2024
GSE224687	Transposable elements are co-opted as oncogenic regulatory elements by lineage-specific transcription factors in prostate cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	130	BED BEDGRAPH TSV	Mathieu Lupien	Sep 08, 2023
GSE220026	Single-cell ATAC-seq analysis of hESCs undergoing neuronal differentiation exposed to paracetamol [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	CSV H5 TBI TSV	Ragnhild Eskeland	Aug 31, 2023
GSE220027	Multi-omics analysis of paracetamol exposure identifies dysregulated genes involved in neurotoxicity and neuronal differentiation of human embryonic stem cells	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	73	CSV H5 MTX TBI TSV TXT	Ragnhild Eskeland	Aug 31, 2023
GSE220114	Mechanistic study of Wee1 kinase inhibition with AZD1775 exposes drug targetable vulnerabilities in acute B-lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	57	BED BIGWIG MTX TSV	Merja Heinäniemi	May 14, 2023
GSE173936	Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	52	CSV H5 MTX TSV TXT	Caleb Lareau	Apr 13, 2023
GSE221753	Translocation t(6;7) in AML-M4 cell line GDM-1 results in MNX1 activation through enhancer-hijacking	Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	14	BED BIGWIG BW NARROWPEAK TSV	Christoph Plass	Feb 27, 2023
GSE129634	Lymphatic endothelial cell identity is controlled by a GATA2 bound enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	TSV TXT	Natasha Harvey	Nov 21, 2022
GSE188486	Leveraging the Epigenomic Landscape to identify Histology-Specific Master transcription factors and to functionally annotate risk loci in renal cell carcinoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	144	BED BW TSV SRA Run Selector	Elio Adib	Nov 01, 2022
GSE185537	Chip-seq data for KMT2D HNSCC	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	34	BED BW TSV	Scot Carson Callahan	Oct 06, 2022
GSE188625	Multi-omic analysis of cell-of-origin and epigenomic state in pediatric H3K27M gliomas	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	110	BW MTX TSV TXT SRA Run Selector	Claudia L Kleinman	Jun 27, 2022
GSE206707	Transcriptional profiling of Hutchinson-Gilford Progeria syndrome fibroblasts reveals deficits in mesenchymal stem cell commitment to differentiation related to early events in endochondral ossification.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	TAR TSV	Rachel Patton McCord	Jun 22, 2022
GSE139398	Higher-order chromatin organization defines PR and PAX2 binding to regulate endometrial cancer cell gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	39	BW NARROWPEAK TSV	Patricia Saragüeta	Mar 09, 2022
GSE167409	A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	39	BROADPEAK TSV TXT SRA Run Selector	Frank M.J. Jacobs	Jan 17, 2022
GSE180158	Sequence determinants of human gene regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	80	BROADPEAK NARROWPEAK TSV TXT	Teemu Kivioja	Nov 12, 2021
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE148396	Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by SNP array SNP genotyping by SNP array	Homo sapiens	29	BIM BW HIC IDAT NARROWPEAK TSV TXT	Matthew Weirauch	Sep 23, 2021
GSE142716	Rett Syndrome linked to defects in forming the MeCP2/Rbfox/LASR complex in mouse models	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED BEDGRAPH BW TSV SRA Run Selector	Xing Fu	Aug 28, 2021