|
| Status |
Public on Feb 25, 2024 |
| Title |
Bone Marrow Stromal Cell Induced Chromatin Remodeling and Associated Transcriptional Changes in Multiple Myeloma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Dec 05, 2022 |
| Last update date |
Apr 05, 2024 |
| Contact name |
Mehmet K. Samur |
| E-mail(s) |
mehmet_samur@dfci.harvard.edu
|
| Organization name |
Dana-Farber Cancer Institute
|
| Department |
Department of Medical Oncology
|
| Lab |
Munshi Laboratory
|
| Street address |
440 Brookline Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (16)
|
| GSM6792301 |
INA6 multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours |
| GSM6792302 |
INA6 multiple myeloma cells without co-culture of HS5 stromal cells |
| GSM6792303 |
MM1S multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours |
| GSM6792304 |
MM1S multiple myeloma cells without co-culture of HS5 stromal cells |
| GSM6792305 |
RPMI multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours rep1 |
| GSM6792306 |
RPMI multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours rep2 |
| GSM6792307 |
RPMI multiple myeloma cells without co-culture of J3 stromal cells rep1 |
| GSM6792308 |
RPMI multiple myeloma cells without co-culture of J3 stromal cells rep2 |
| GSM6792309 |
INA6 multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours [RNA-Seq] |
| GSM6792310 |
INA6 multiple myeloma cells without co-culture of HS5 stromal cells [RNA-Seq] |
| GSM6792311 |
MM1S multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours [RNA-Seq] |
| GSM6792312 |
MM1S multiple myeloma cells without co-culture of HS5 stromal cells [RNA-Seq] |
| GSM6792313 |
RPMI multiple myeloma cells co-cultured with HS5 stromal cells for 72 hours [RNA-Seq] |
| GSM6792314 |
RPMI multiple myeloma cells without co-culture of J3 stromal cells [RNA-Seq] |
| GSM8187204 |
Multiome - GEX - Sample 1 |
| GSM8187205 |
Multiome - ATAC - Sample 1 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE220142 |
Bone Marrow Stromal Cell Induced Chromatin Remodeling and Associated Transcriptional Changes in Multiple Myeloma [ATAC-Seq] |
| GSE220143 |
Bone Marrow Stromal Cell Induced Chromatin Remodeling and Associated Transcriptional Changes in Multiple Myeloma [RNA-Seq] |
| GSE263178 |
Bone Marrow Stromal Cells Induce Chromatin Remodeling in Multiple Myeloma Cells Leading to Transcriptional Changes [Multiome (10X Genomics) - scRNA-Seq & scATAC-Seq] |
|
| Relations |
| BioProject |
PRJNA908853 |
Less...
More...