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10401 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL11154
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE24565	Small RNA-seq from ENCODE/Cold Spring Harbor Lab	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	87	BAM BEDRNAELEMENTS BIGWIG GTF PDF TXT SRA Run Selector	ENCODE DCC	Oct 08, 2010
GSE25882	Genome-wide maps of chromatin state in NCCIT cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	14	BED SAM TXT SRA Run Selector	Inkyung Jung	Mar 07, 2012
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	BAM BIGWIG BROADPEAK NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE27452	Genome-wide maps of polyadenylation sites in control and PABPN1kd cells	Other	Homo sapiens	9	WIG SRA Run Selector	Ran Elkon	Apr 15, 2012
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE28332	The Demethylase JMJD2C/KDM4C Localizes to H3K4me3 Positive Transcription Start Sites	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	30	BEDGRAPH CEL	Marianne Terndrup Pedersen	Jan 09, 2014
GSE29069	Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BAM	Gary Chung Hon	Sep 16, 2011
GSE29120	Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954)	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29127	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29181	Core transcriptional regulatory circuit controlled by the TAL1 complex in human T-cell acute lymphoblastic leukemia	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	64	CEL WIG YLF	Richard A Young	Aug 16, 2012
GSE29195	Genome-wide location analysis of WNT (Tcf7l2) and BMP (SMAD1) in human hematopoeitic cell lines co-occupied with lineage specific regulators (GATA1, GATA2, CEBPA)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	WIG YLF SRA Run Selector	Teresa Venezia Bowman	Oct 07, 2011
GSE29196	Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	WIG YLF	Teresa Venezia Bowman	Oct 07, 2011
GSE29282	A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	46	BED BW TXT WIG SRA Run Selector	Katerina Hatzi	Aug 05, 2013
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE29714	Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3' UTRs and Near Stop Codons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	11	BW TXT SRA Run Selector	Christopher E Mason	May 17, 2012